JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EDEM1_chr3_5182707_5224958	0/0	t0056	4140	1	0	1	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0057	4140	1	0	1	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0058	4140	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0059	4140	1	0	0	0	0	1	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0060	4140	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0061	4140	1	1	0	0	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM1_chr3_5182707_5224958	0/0	t0062	4140	1	0	0	1	0	0	copy fasta	EDEM1	chr3	5182707	5224958
EDEM2_chr20_35110364_35152336	1/1	t0001	148	325	90	64	124	12	33	copy fasta	EDEM2	chr20	35110364	35152336
EDEM2_chr20_35110364_35152336	0/0	t0002	148	7	6	0	0	0	1	copy fasta	EDEM2	chr20	35110364	35152336
EDEM3_chr1_184685237_184759858	1/1	t0001	4039	95	13	18	48	5	9	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0002	4040	83	2	11	58	3	9	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0003	4040	41	28	7	6	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0004	4039	20	7	6	6	1	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0005	4039	11	0	2	9	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0006	4040	9	9	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0007	4039	7	0	0	7	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0008	4040	6	1	3	0	1	1	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0009	4040	6	5	1	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0010	4039	4	4	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0011	4040	4	3	1	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0012	4040	3	0	2	0	1	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0013	4039	3	3	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0014	4047	3	0	0	3	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0015	4040	2	0	0	2	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0016	4040	2	0	0	2	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0017	4040	2	2	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0018	4040	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0019	4040	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0020	4040	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0021	4040	1	0	0	1	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0022	4040	1	0	0	0	1	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0023	4039	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0024	4039	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0025	4039	1	0	0	1	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0026	4040	1	0	0	1	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0027	4041	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0028	4039	1	0	0	1	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0029	4039	1	0	0	1	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0030	4039	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0031	4039	1	0	0	1	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0032	4039	1	0	0	1	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0033	4040	1	0	0	0	0	1	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0034	4040	1	0	1	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0035	4040	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0036	4039	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0037	4040	1	0	1	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0038	4040	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0039	4039	1	0	1	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDEM3_chr1_184685237_184759858	0/0	t0040	4040	1	1	0	0	0	0	copy fasta	EDEM3	chr1	184685237	184759858
EDF1_chr9_136857119_136871308	1/1	t0001	216	376	90	78	146	16	44	copy fasta	EDF1	chr9	136857119	136871308