JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EDF1_chr9_136857119_136871308	0/0	t0002	216	1	0	0	1	0	0	copy fasta	EDF1	chr9	136857119	136871308
EDF1_chr9_136857119_136871308	0/0	t0003	216	1	0	0	1	0	0	copy fasta	EDF1	chr9	136857119	136871308
EDIL3_chr5_83935554_84389880	0/1	t0001	3372	46	14	7	14	5	5	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0002	3372	38	8	15	12	0	3	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	1/0	t0003	3372	30	11	10	1	1	6	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0004	3371	16	2	3	7	2	2	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0005	3372	5	4	1	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0006	3373	4	4	0	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0007	3373	3	0	2	0	0	1	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0008	3372	2	0	1	0	0	1	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0009	3373	2	0	1	1	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0010	3372	2	2	0	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0011	3373	1	0	1	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0012	3373	1	0	0	1	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0013	3371	1	0	0	1	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0014	3372	1	0	0	0	0	1	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0015	3372	1	0	0	0	0	1	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0016	3372	1	0	0	1	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0017	3372	1	1	0	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0018	3372	1	1	0	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0019	3372	1	1	0	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDIL3_chr5_83935554_84389880	0/0	t0020	3372	1	0	1	0	0	0	copy fasta	EDIL3	chr5	83935554	84389880
EDN1_chr6_12285361_12302194	0/1	t0001	1396	317	44	60	173	10	29	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	1/0	t0002	1397	81	19	19	30	4	8	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	t0003	1396	31	24	2	2	0	3	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	t0004	1396	5	4	1	0	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	t0005	1396	4	4	0	0	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	t0006	1396	4	0	0	4	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	t0007	1396	3	0	3	0	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	t0008	1397	2	0	0	2	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	t0009	1396	2	0	0	0	0	2	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	t0010	1396	1	0	1	0	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	t0011	1396	1	0	0	1	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN1_chr6_12285361_12302194	0/0	t0012	1396	1	1	0	0	0	0	copy fasta	EDN1	chr6	12285361	12302194
EDN2_chr1_41473775_41489683	0/1	t0001	717	374	77	73	183	12	28	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	t0002	717	32	7	3	15	0	7	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	t0003	717	21	5	1	8	3	4	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	1/0	t0004	717	4	3	0	0	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	t0005	717	4	0	0	0	2	2	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	t0006	717	3	2	0	0	1	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	t0007	714	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	t0008	717	1	0	0	0	0	1	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	t0009	717	1	0	1	0	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN2_chr1_41473775_41489683	0/0	t0010	717	1	0	0	1	0	0	copy fasta	EDN2	chr1	41473775	41489683
EDN3_chr20_59295611_59330992	1/1	t0001	1736	226	38	37	99	14	36	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0002	1735	111	42	11	48	1	9	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0003	1737	18	0	5	10	0	3	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0004	1736	16	0	0	16	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0005	1735	5	5	0	0	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0006	1735	4	4	0	0	0	0	copy fasta	EDN3	chr20	59295611	59330992