JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EDN3_chr20_59295611_59330992	0/0	t0007	1735	4	4	0	0	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0008	1736	4	2	1	0	1	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0009	1736	3	0	2	1	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0010	1735	1	0	0	1	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0011	1735	1	0	0	1	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0012	1736	1	0	0	1	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0013	1736	1	0	0	1	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0014	1736	1	0	0	1	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0015	1736	1	1	0	0	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDN3_chr20_59295611_59330992	0/0	t0016	1735	1	0	0	1	0	0	copy fasta	EDN3	chr20	59295611	59330992
EDNRA_chr4_147476097_147549954	1/0	t0001	2687	52	2	14	30	1	4	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0002	2688	40	8	3	21	0	8	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0003	2688	32	5	5	14	1	7	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/1	t0004	2687	31	10	5	12	1	2	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0005	2688	30	3	7	13	1	6	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0006	2687	17	9	2	6	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0007	2687	15	11	2	2	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0008	2687	7	6	1	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0009	2688	6	6	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0010	2687	6	6	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0011	2687	5	5	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0012	2687	5	5	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0013	2688	3	0	0	0	0	3	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0014	2687	3	3	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0015	2688	2	2	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0016	2687	2	2	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0017	2687	2	2	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0018	2688	2	2	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0019	2688	2	0	0	2	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0020	2687	2	0	0	2	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0021	2687	1	1	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0022	2688	1	0	0	1	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0023	2688	1	1	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0024	2688	1	0	0	1	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0025	2688	1	0	0	1	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0026	2687	1	1	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0027	2636	1	1	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0028	2688	1	0	0	1	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0029	2687	1	1	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0030	2688	1	1	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0031	2687	1	0	0	1	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0032	2688	1	0	0	1	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0033	2687	1	1	0	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0034	2687	1	0	0	1	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0035	2687	1	0	1	0	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRA_chr4_147476097_147549954	0/0	t0036	2688	1	0	0	1	0	0	copy fasta	EDNRA	chr4	147476097	147549954
EDNRB_chr13_77890487_77923831	0/1	t0001	2972	339	76	47	172	10	33	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0002	2972	19	1	5	6	4	3	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	1/0	t0003	2972	10	8	1	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0004	2972	8	0	4	0	1	3	copy fasta	EDNRB	chr13	77890487	77923831