JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EDNRB_chr13_77890487_77923831	0/0	t0005	2972	5	0	1	3	0	1	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0006	2972	5	4	1	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0007	2972	4	0	0	4	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0008	2972	2	0	2	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0009	2972	2	0	1	0	1	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0010	2972	2	0	1	0	0	1	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0011	2972	2	1	1	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0012	2972	2	2	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0013	2972	1	0	0	0	0	1	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0014	2972	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0015	2972	1	0	1	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0016	2972	1	1	0	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0017	2972	1	0	0	1	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDNRB_chr13_77890487_77923831	0/0	t0018	2972	1	0	1	0	0	0	copy fasta	EDNRB	chr13	77890487	77923831
EDRF1_chr10_125714709_125769139	1/1	t0001	767	280	73	67	100	10	28	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	t0002	767	26	0	0	26	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	t0003	767	6	6	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	t0004	767	5	5	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	t0005	767	2	2	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	t0006	767	1	1	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	t0007	767	1	1	0	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EDRF1_chr10_125714709_125769139	0/0	t0008	767	1	0	1	0	0	0	copy fasta	EDRF1	chr10	125714709	125769139
EEA1_chr12_92765637_92934295	0/0	t0001	5612	52	10	15	15	2	10	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/1	t0002	5610	25	2	8	5	3	6	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0003	5610	21	5	9	5	1	1	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0004	5608	14	12	2	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0005	5614	14	0	5	2	2	5	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0006	5610	13	9	4	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0007	5612	12	2	5	0	3	2	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0008	5604	9	2	1	5	0	1	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0009	5614	7	0	0	1	0	6	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0010	5605	6	6	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	1/0	t0011	5604	5	0	2	0	2	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0012	5604	5	4	1	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0013	5613	5	4	0	1	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0014	5605	4	4	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0015	5609	3	3	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0016	5607	3	3	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0017	5614	3	0	1	0	0	2	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0018	5606	3	3	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0019	5612	2	2	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0020	5611	2	0	2	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0021	5604	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0022	5605	1	0	0	0	1	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0023	5612	1	0	0	1	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0024	5604	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0025	5612	1	0	1	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0026	5610	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0027	5610	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0028	5610	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295