JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EEA1_chr12_92765637_92934295	0/0	t0029	5612	1	0	0	0	0	1	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0030	5610	1	0	1	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0031	5605	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0032	5609	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0033	5605	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0034	5605	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0035	5610	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0036	5616	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0037	5610	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0038	5610	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0039	5616	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0040	5614	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0041	5606	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0042	5610	1	0	0	1	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0043	5612	1	0	0	0	0	1	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0044	5611	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0045	5611	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0046	5615	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0047	5611	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0048	5604	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0049	5621	1	0	0	1	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0050	5611	1	0	0	1	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0051	5616	1	0	0	0	0	1	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0052	5610	1	0	1	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0053	5612	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0054	5613	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0055	5608	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EEA1_chr12_92765637_92934295	0/0	t0056	5608	1	1	0	0	0	0	copy fasta	EEA1	chr12	92765637	92934295
EED_chr11_86239753_86283810	1/1	t0001	763	385	81	59	188	14	41	copy fasta	EED	chr11	86239753	86283810
EED_chr11_86239753_86283810	0/0	t0002	763	2	2	0	0	0	0	copy fasta	EED	chr11	86239753	86283810
EED_chr11_86239753_86283810	0/0	t0003	763	2	0	1	1	0	0	copy fasta	EED	chr11	86239753	86283810
EED_chr11_86239753_86283810	0/0	t0004	763	1	1	0	0	0	0	copy fasta	EED	chr11	86239753	86283810
EED_chr11_86239753_86283810	0/0	t0005	763	1	0	0	0	0	1	copy fasta	EED	chr11	86239753	86283810
EED_chr11_86239753_86283810	0/0	t0006	763	1	0	0	1	0	0	copy fasta	EED	chr11	86239753	86283810
EEF1A1_chr6_73510750_73526032	0/1	t0001	2124	149	28	24	60	12	24	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0002	2124	55	1	12	35	3	4	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0003	2124	47	6	8	33	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0004	2125	46	2	12	30	0	2	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0005	2122	24	0	7	14	0	3	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	1/0	t0006	2124	17	13	0	3	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0007	2124	13	6	0	7	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0008	2124	11	11	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0009	2124	6	6	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0010	2124	6	0	0	6	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0011	2124	6	0	0	6	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0012	2124	5	1	1	0	2	1	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0013	2122	4	4	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0014	2124	4	4	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0015	2124	4	0	0	4	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0016	2124	3	3	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032