JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EEF1A1_chr6_73510750_73526032	0/0	t0017	2124	3	2	1	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0018	2123	3	2	1	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0019	2125	3	0	0	3	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0020	2124	2	2	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0021	2124	2	2	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0022	2124	1	1	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0023	2124	1	1	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0024	2124	1	1	0	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0025	2124	1	0	0	0	0	1	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0026	2124	1	0	0	0	0	1	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0027	2125	1	0	1	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0028	2125	1	0	1	0	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0029	2124	1	0	0	0	1	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0030	2124	1	0	0	1	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0031	2124	1	0	0	1	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A1_chr6_73510750_73526032	0/0	t0032	2124	1	0	0	1	0	0	copy fasta	EEF1A1	chr6	73510750	73526032
EEF1A2_chr20_63483014_63504083	0/1	t0001	380	357	79	78	142	16	41	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	t0002	381	5	2	1	1	0	1	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	t0003	380	4	4	0	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	t0004	380	1	0	0	1	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	t0005	382	1	0	1	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	t0006	381	1	1	0	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	t0007	380	1	0	0	1	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	t0008	381	1	1	0	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	t0009	382	1	1	0	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	1/0	t0010	382	1	0	0	0	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1A2_chr20_63483014_63504083	0/0	t0011	380	1	0	0	1	0	0	copy fasta	EEF1A2	chr20	63483014	63504083
EEF1AKMT1_chr13_20723731_20778961	1/1	t0001	410	342	85	55	138	18	44	copy fasta	EEF1AKMT1	chr13	20723731	20778961
EEF1AKMT1_chr13_20723731_20778961	0/0	t0002	410	3	3	0	0	0	0	copy fasta	EEF1AKMT1	chr13	20723731	20778961
EEF1AKMT1_chr13_20723731_20778961	0/0	t0003	410	2	1	1	0	0	0	copy fasta	EEF1AKMT1	chr13	20723731	20778961
EEF1AKMT1_chr13_20723731_20778961	0/0	t0004	410	1	1	0	0	0	0	copy fasta	EEF1AKMT1	chr13	20723731	20778961
EEF1AKMT2_chr10_124752834_124796887	0/1	t0001	2723	141	11	20	81	4	24	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	1/0	t0002	2724	122	37	14	55	5	10	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0003	2724	27	2	2	21	1	1	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0004	2723	18	18	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0005	2724	15	0	0	15	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0006	2723	13	8	1	0	1	3	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0007	2722	6	0	0	2	3	1	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0008	2723	3	3	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0009	2723	2	0	0	2	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0010	2724	1	1	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0011	2724	1	1	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0012	2724	1	0	1	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0013	2724	1	0	0	1	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0014	2723	1	0	0	1	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0015	2724	1	1	0	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0016	2723	1	0	1	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0017	2724	1	0	0	1	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0018	2723	1	0	0	0	0	1	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT2_chr10_124752834_124796887	0/0	t0019	2723	1	0	0	1	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887