JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EEF1AKMT2_chr10_124752834_124796887	0/0	t0020	2723	1	0	1	0	0	0	copy fasta	EEF1AKMT2	chr10	124752834	124796887
EEF1AKMT3_chr12_57767614_57787541	0/0	t0001	2008	125	3	21	79	5	17	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	1/0	t0002	2007	97	41	30	17	3	5	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/1	t0003	2008	89	12	20	36	5	15	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0004	2007	14	14	0	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0005	2008	7	3	1	1	0	2	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0006	2007	7	6	1	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0007	2007	4	0	1	3	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0008	2007	2	2	0	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0009	2007	2	0	0	2	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0010	2007	2	2	0	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0011	2008	1	0	0	1	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0012	2007	1	1	0	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0013	2007	1	1	0	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0014	2008	1	1	0	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0015	2008	1	0	0	0	1	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0016	2007	1	0	0	0	0	1	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0017	2007	1	1	0	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0018	2008	1	1	0	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0019	2007	1	0	1	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0020	2007	1	0	1	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0021	2008	1	0	0	1	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0022	2008	1	1	0	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT3_chr12_57767614_57787541	0/0	t0023	2007	1	1	0	0	0	0	copy fasta	EEF1AKMT3	chr12	57767614	57787541
EEF1AKMT4_chr3_184244672_184263759	1/1	t0001	208	375	87	70	156	16	44	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1AKMT4_chr3_184244672_184263759	0/0	t0002	208	3	3	0	0	0	0	copy fasta	EEF1AKMT4	chr3	184244672	184263759
EEF1B2_chr2_206154895_206167928	1/1	t0001	131	357	80	66	159	12	38	copy fasta	EEF1B2	chr2	206154895	206167928
EEF1B2_chr2_206154895_206167928	0/0	t0002	131	2	2	0	0	0	0	copy fasta	EEF1B2	chr2	206154895	206167928
EEF1B2_chr2_206154895_206167928	0/0	t0003	107	1	0	0	1	0	0	copy fasta	EEF1B2	chr2	206154895	206167928
EEF1D_chr8_143574728_143602415	0/1	t0001	147	383	88	72	174	8	40	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	t0002	148	5	5	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1D_chr8_143574728_143602415	0/0	t0003	147	1	1	0	0	0	0	copy fasta	EEF1D	chr8	143574728	143602415
EEF1E1_chr6_8074395_8107548	1/1	t0001	523	437	90	82	209	14	40	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1E1_chr6_8074395_8107548	0/0	t0002	523	2	2	0	0	0	0	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1E1_chr6_8074395_8107548	0/0	t0003	523	1	0	0	1	0	0	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1E1_chr6_8074395_8107548	0/0	t0004	523	1	1	0	0	0	0	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1E1_chr6_8074395_8107548	0/0	t0005	523	1	1	0	0	0	0	copy fasta	EEF1E1	chr6	8074395	8107548
EEF1G_chr11_62554596_62578891	1/1	t0001	133	262	80	60	82	12	26	copy fasta	EEF1G	chr11	62554596	62578891
EEF2KMT_chr16_5079284_5102795	0/0	t0001	1405	213	35	32	108	7	31	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/1	t0002	1407	113	14	26	56	7	9	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0003	1405	47	0	19	24	1	3	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0004	1405	15	12	1	2	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0005	1405	13	13	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0006	1407	9	4	3	0	0	2	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0007	1405	6	6	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0008	1405	5	5	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0009	1405	4	4	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	1/0	t0010	1405	3	2	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0011	1405	2	0	2	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0012	1405	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795