JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EEF2KMT_chr16_5079284_5102795	0/0	t0013	1405	1	0	0	0	0	1	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0014	1405	1	0	0	0	1	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0015	1405	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0016	1405	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0017	1405	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0018	1405	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0019	1405	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0020	1405	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0021	1405	1	1	0	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0022	1407	1	0	1	0	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2KMT_chr16_5079284_5102795	0/0	t0023	1405	1	0	0	1	0	0	copy fasta	EEF2KMT	chr16	5079284	5102795
EEF2K_chr16_22201278_22293738	0/1	t0001	5220	117	14	27	59	4	12	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0002	5217	28	26	2	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0003	5218	22	0	5	17	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0004	5217	18	4	0	6	1	7	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0005	5218	18	17	1	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	1/0	t0006	5221	18	0	1	15	0	1	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0007	5219	15	0	7	3	1	4	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0008	5217	10	10	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0009	5220	7	7	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0010	5220	4	0	1	0	0	3	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0011	5216	3	2	1	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0012	5217	3	3	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0013	5218	2	0	0	0	0	2	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0014	5221	2	2	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0015	5218	2	0	0	0	0	2	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0016	5220	1	0	0	0	1	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0017	5219	1	0	1	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0018	5215	1	1	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0019	5220	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0020	5219	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0021	5217	1	1	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0022	5217	1	0	1	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0023	5217	1	1	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0024	5220	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0025	5221	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0026	5219	1	0	0	0	1	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0027	5220	1	1	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0028	5220	1	0	1	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0029	5220	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0030	5220	1	1	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0031	5221	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0032	5220	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0033	5221	1	1	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0034	5218	1	1	0	0	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0035	5220	1	0	0	0	0	1	copy fasta	EEF2K	chr16	22201278	22293738
EEF2K_chr16_22201278_22293738	0/0	t0036	5220	1	0	0	1	0	0	copy fasta	EEF2K	chr16	22201278	22293738
EEF2_chr19_3971056_3990463	1/0	t0001	582	285	25	67	144	14	34	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0002	582	60	30	5	14	0	11	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0003	582	28	27	1	0	0	0	copy fasta	EEF2	chr19	3971056	3990463