JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EEF2_chr19_3971056_3990463	0/0	t0004	582	8	0	0	7	0	1	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0005	582	7	7	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0006	582	4	0	4	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0007	582	4	4	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0008	582	1	1	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0009	582	1	1	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0010	559	1	0	0	1	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0011	582	1	1	0	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0012	582	1	0	0	1	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0013	582	1	0	0	1	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEF2_chr19_3971056_3990463	0/0	t0014	582	1	0	1	0	0	0	copy fasta	EEF2	chr19	3971056	3990463
EEFSEC_chr3_128148481_128413646	1/1	t0001	415	253	55	50	104	12	30	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	t0002	415	13	11	2	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	t0003	415	3	3	0	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	t0004	415	1	0	0	1	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	t0005	415	1	0	0	1	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEFSEC_chr3_128148481_128413646	0/0	t0006	415	1	1	0	0	0	0	copy fasta	EEFSEC	chr3	128148481	128413646
EEIG1_chr9_127935582_127985989	0/1	t0001	3465	167	48	30	62	6	20	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	1/0	t0002	3463	86	20	5	48	1	11	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0003	3466	31	0	2	27	0	2	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0004	3462	13	0	0	13	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0005	3466	6	0	1	0	1	4	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0006	3466	5	4	1	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0007	3466	4	4	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0008	3466	3	3	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0009	3466	2	2	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0010	3465	2	0	0	0	0	2	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0011	3465	2	2	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0012	3465	1	0	1	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0013	3463	1	0	0	1	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0014	3465	1	0	0	1	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0015	3466	1	1	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0016	3466	1	0	1	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0017	3465	1	1	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0018	3463	1	0	0	1	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0019	3465	1	0	0	0	0	1	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0020	3465	1	0	0	0	0	1	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0021	3465	1	1	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0022	3465	1	0	1	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0023	3466	1	0	1	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0024	3465	1	1	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0025	3465	1	0	0	0	0	1	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0026	3465	1	0	1	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0027	3465	1	0	0	1	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0028	3463	1	1	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0029	3465	1	1	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0030	3465	1	0	0	1	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0031	3466	1	0	0	1	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG1_chr9_127935582_127985989	0/0	t0032	3465	1	1	0	0	0	0	copy fasta	EEIG1	chr9	127935582	127985989
EEIG2_chr1_108555100_108644322	0/1	t0001	4504	112	18	29	52	0	12	copy fasta	EEIG2	chr1	108555100	108644322