JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EEIG2_chr1_108555100_108644322	0/0	t0002	4515	28	10	3	14	0	1	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0003	4504	24	0	0	23	0	1	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0004	4494	23	0	9	14	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0005	4515	14	14	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0006	4504	9	0	1	3	0	5	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0007	4506	6	0	2	1	0	3	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0008	4504	5	5	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	1/0	t0009	4502	5	4	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0010	4516	5	5	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0011	4477	2	0	2	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0012	4515	2	2	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0013	4504	2	0	2	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0014	4487	2	0	2	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0015	4504	2	0	0	2	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0016	4504	2	2	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0017	4503	2	0	1	1	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0018	4503	2	2	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0019	4506	2	2	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0020	4524	2	0	0	2	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0021	4483	2	2	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0022	4494	1	1	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0023	4494	1	1	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0024	4504	1	0	0	1	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0025	4503	1	0	1	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0026	4503	1	0	0	1	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0027	4504	1	0	1	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0028	4504	1	0	0	1	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0029	4503	1	0	1	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0030	4504	1	1	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0031	4503	1	1	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0032	4504	1	1	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0033	4503	1	1	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0034	4504	1	1	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0035	4503	1	1	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0036	4504	1	1	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0037	4506	1	0	0	0	0	1	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0038	4516	1	0	0	1	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0039	4518	1	1	0	0	0	0	copy fasta	EEIG2	chr1	108555100	108644322
EEIG2_chr1_108555100_108644322	0/0	t0040	4518	1	0	0	0	0	1	copy fasta	EEIG2	chr1	108555100	108644322
EEPD1_chr7_36148254_36306538	0/0	t0001	2946	66	2	12	42	1	9	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0002	2946	49	2	3	30	3	11	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0003	2946	26	0	4	19	0	3	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/1	t0004	2946	19	1	10	2	1	4	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0005	2946	16	1	5	8	2	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0006	2946	14	4	3	5	1	1	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0007	2946	13	0	3	7	0	3	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0008	2946	10	1	2	5	1	1	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0009	2946	8	8	0	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0010	2946	7	5	2	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0011	2946	6	4	0	0	0	2	copy fasta	EEPD1	chr7	36148254	36306538