JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EEPD1_chr7_36148254_36306538	0/0	t0062	2946	1	0	1	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0063	2946	1	0	0	0	0	1	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0064	2946	1	0	0	1	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0065	2946	1	0	0	0	1	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0066	2946	1	0	1	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0067	2946	1	0	1	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0068	2946	1	1	0	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EEPD1_chr7_36148254_36306538	0/0	t0069	2946	1	0	1	0	0	0	copy fasta	EEPD1	chr7	36148254	36306538
EFCAB10_chr7_105560124_105586493	1/1	t0001	354	390	73	77	177	17	44	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	t0002	354	18	0	1	17	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	t0003	354	16	16	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	t0004	354	2	2	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	t0005	354	1	0	0	0	1	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB10_chr7_105560124_105586493	0/0	t0006	354	1	1	0	0	0	0	copy fasta	EFCAB10	chr7	105560124	105586493
EFCAB11_chr14_89789669_89959730	0/0	t0001	2643	50	12	2	33	0	3	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/1	t0002	2646	46	13	15	1	4	12	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0003	2642	38	1	6	24	0	7	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0004	2644	33	12	6	10	0	5	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0005	2647	21	1	3	15	2	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0006	2647	10	5	5	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0007	2644	9	2	5	2	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0008	2642	8	7	1	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0009	2644	8	8	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0010	2644	7	4	0	0	0	3	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0011	2646	5	0	0	5	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	1/0	t0012	2645	4	2	0	1	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0013	2644	4	0	3	0	0	1	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0014	2643	3	3	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0015	2643	3	0	0	3	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0016	2646	3	0	0	3	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0017	2642	2	2	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0018	2645	2	0	1	0	0	1	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0019	2645	2	0	0	2	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0020	2644	2	2	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0021	2646	2	0	1	0	1	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0022	2643	1	0	0	0	0	1	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0023	2646	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0024	2645	1	0	0	0	0	1	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0025	2642	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0026	2643	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0027	2642	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0028	2644	1	0	0	1	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0029	2607	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0030	2645	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0031	2642	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0032	2646	1	0	1	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0033	2644	1	0	1	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0034	2646	1	0	0	1	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0035	2642	1	0	0	0	0	1	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0036	2645	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730