JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFCAB11_chr14_89789669_89959730	0/0	t0037	2643	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0038	2643	1	0	1	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0039	2647	1	1	0	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0040	2645	1	0	0	0	1	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0041	2642	1	0	1	0	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0042	2646	1	0	0	0	0	1	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB11_chr14_89789669_89959730	0/0	t0043	2642	1	0	0	1	0	0	copy fasta	EFCAB11	chr14	89789669	89959730
EFCAB12_chr3_129396321_129433636	1/1	t0001	421	290	74	53	124	14	23	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	t0002	421	55	17	3	28	0	7	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	t0003	421	39	1	19	6	2	11	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	t0004	421	1	0	1	0	0	0	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB12_chr3_129396321_129433636	0/0	t0005	421	1	0	0	0	0	1	copy fasta	EFCAB12	chr3	129396321	129433636
EFCAB13_chr17_47318955_47446312	1/1	t0001	1036	277	59	46	130	9	31	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	t0002	1036	47	2	4	38	2	1	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	t0003	1036	17	3	9	0	1	4	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	t0004	1036	6	5	1	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	t0005	1036	3	3	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	t0006	1036	2	2	0	0	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	t0007	1036	1	0	0	0	0	1	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	t0008	1036	1	0	0	0	0	1	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	t0009	1036	1	0	0	1	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB13_chr17_47318955_47446312	0/0	t0010	1036	1	0	0	1	0	0	copy fasta	EFCAB13	chr17	47318955	47446312
EFCAB14_chr1_46670159_46724114	0/0	t0001	4331	88	7	20	48	1	12	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0002	4330	82	16	2	57	0	7	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0003	4330	77	13	22	31	5	6	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	1/1	t0004	4330	44	6	7	14	3	12	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0005	4330	20	6	2	10	0	2	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0006	4330	8	7	1	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0007	4330	7	6	1	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0008	4330	4	4	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0009	4330	4	4	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0010	4330	3	3	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0011	4331	3	3	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0012	4331	3	3	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0013	4331	3	3	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0014	4330	2	0	0	0	0	2	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0015	4333	2	2	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0016	4330	2	0	0	1	1	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0017	4331	2	0	0	2	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0018	4331	1	0	0	1	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0019	4330	1	0	0	1	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0020	4330	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0021	4330	1	0	1	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0022	4330	1	0	0	1	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0023	4331	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0024	4330	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0025	4330	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0026	4333	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0027	4331	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0028	4330	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114