JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFCAB14_chr1_46670159_46724114	0/0	t0029	4330	1	0	0	0	1	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0030	4330	1	0	1	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0031	4331	1	0	0	1	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0032	4330	1	0	0	0	1	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0033	4331	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0034	4331	1	1	0	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0035	4331	1	0	1	0	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0036	4331	1	0	0	0	0	1	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB14_chr1_46670159_46724114	0/0	t0037	4330	1	0	0	1	0	0	copy fasta	EFCAB14	chr1	46670159	46724114
EFCAB2_chr1_244964682_245092837	1/0	t0001	930	112	55	14	27	3	12	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	t0002	930	85	20	18	35	4	8	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/1	t0003	930	75	1	14	55	3	1	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	t0004	930	8	0	2	5	0	1	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	t0005	930	3	3	0	0	0	0	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	t0006	930	2	2	0	0	0	0	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	t0007	930	1	0	0	1	0	0	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	t0008	930	1	1	0	0	0	0	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	t0009	930	1	0	0	1	0	0	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	t0010	930	1	0	0	1	0	0	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB2_chr1_244964682_245092837	0/0	t0011	930	1	0	0	1	0	0	copy fasta	EFCAB2	chr1	244964682	245092837
EFCAB3_chr17_62375553_62421480	0/0	t0001	230	368	98	70	160	14	26	copy fasta	EFCAB3	chr17	62375553	62421480
EFCAB5_chr17_29936634_30113452	1/1	t0001	592	123	40	28	29	8	16	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	t0002	592	123	44	30	27	6	16	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	t0003	592	1	0	0	1	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB5_chr17_29936634_30113452	0/0	t0004	592	1	0	0	1	0	0	copy fasta	EFCAB5	chr17	29936634	30113452
EFCAB6_chr22_43523778_43817305	1/1	t0001	358	266	65	47	106	15	31	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	t0002	358	14	14	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	t0003	358	3	1	1	0	0	1	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	t0004	358	2	2	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	t0005	358	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	t0006	358	1	0	0	0	1	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	t0007	358	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	t0008	358	1	0	0	1	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB6_chr22_43523778_43817305	0/0	t0009	358	1	1	0	0	0	0	copy fasta	EFCAB6	chr22	43523778	43817305
EFCAB7_chr1_63518525_63577693	1/1	t0001	288	369	86	76	163	6	36	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	t0002	288	3	0	0	3	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB7_chr1_63518525_63577693	0/0	t0003	288	2	2	0	0	0	0	copy fasta	EFCAB7	chr1	63518525	63577693
EFCAB8_chr20_32853923_32966845	1/1	t0001	331	129	46	28	37	4	12	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	t0002	331	56	5	3	35	3	10	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	t0003	331	46	11	18	2	3	12	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	t0004	331	28	16	6	5	1	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	t0005	331	11	7	2	0	0	2	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	t0006	331	8	0	6	1	1	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	t0007	331	4	4	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	t0008	331	1	1	0	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB8_chr20_32853923_32966845	0/0	t0009	331	1	0	1	0	0	0	copy fasta	EFCAB8	chr20	32853923	32966845
EFCAB9_chr5_172189172_172208454	1/1	t0001	110	402	93	73	176	14	44	copy fasta	EFCAB9	chr5	172189172	172208454
EFCAB9_chr5_172189172_172208454	0/0	t0002	110	5	5	0	0	0	0	copy fasta	EFCAB9	chr5	172189172	172208454
EFCAB9_chr5_172189172_172208454	0/0	t0003	110	1	0	1	0	0	0	copy fasta	EFCAB9	chr5	172189172	172208454
EFCC1_chr3_128996304_129045742	1/1	t0001	1220	310	54	66	139	10	39	copy fasta	EFCC1	chr3	128996304	129045742