JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFCC1_chr3_128996304_129045742	0/0	t0002	1220	10	9	1	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0003	1220	10	10	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0004	1220	6	5	1	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0005	1220	4	4	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0006	1220	3	3	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0007	1220	2	2	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0008	1220	2	1	1	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0009	1220	2	0	2	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0010	1220	1	1	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0011	1220	1	0	0	1	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0012	1220	1	1	0	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0013	1220	1	0	1	0	0	0	copy fasta	EFCC1	chr3	128996304	129045742
EFCC1_chr3_128996304_129045742	0/0	t0014	1220	1	0	0	0	0	1	copy fasta	EFCC1	chr3	128996304	129045742
EFEMP1_chr2_55860967_55928782	1/0	t0001	1227	249	52	47	113	13	23	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0002	1227	21	20	1	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0003	1227	13	5	2	4	0	2	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/1	t0004	1227	12	0	4	2	1	4	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0005	1227	12	2	1	9	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0006	1227	9	9	0	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0007	1227	6	0	0	5	0	1	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0008	1227	5	0	0	5	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0009	1227	4	0	0	4	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0010	1226	4	0	3	0	0	1	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0011	1227	3	0	0	3	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0012	1227	2	0	0	2	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0013	1227	2	2	0	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0014	1227	1	0	0	1	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0015	1227	1	0	0	0	0	1	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0016	1226	1	0	0	0	0	1	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0017	1227	1	0	0	0	0	1	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0018	1227	1	0	0	1	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0019	1227	1	1	0	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0020	1227	1	0	0	1	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP1_chr2_55860967_55928782	0/0	t0021	1227	1	1	0	0	0	0	copy fasta	EFEMP1	chr2	55860967	55928782
EFEMP2_chr11_65861441_65877800	0/1	t0001	603	223	54	45	86	8	29	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	1/0	t0002	603	144	31	21	81	2	8	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	t0003	603	5	5	0	0	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	t0004	603	1	0	0	1	0	0	copy fasta	EFEMP2	chr11	65861441	65877800
EFEMP2_chr11_65861441_65877800	0/0	t0005	603	1	0	0	0	0	1	copy fasta	EFEMP2	chr11	65861441	65877800
EFHB_chr3_19874472_19939217	0/1	t0001	359	181	42	44	56	10	28	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	1/0	t0002	359	162	51	32	58	6	14	copy fasta	EFHB	chr3	19874472	19939217
EFHB_chr3_19874472_19939217	0/0	t0003	359	1	1	0	0	0	0	copy fasta	EFHB	chr3	19874472	19939217
EFHC1_chr6_52415342_52502198	0/0	t0001	4932	87	13	20	40	4	10	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0002	4934	71	0	9	51	1	10	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	1/0	t0003	4927	22	2	6	9	2	2	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0004	4934	16	13	3	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0005	4948	15	1	1	13	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0006	4946	14	1	0	12	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/1	t0007	4947	13	0	2	7	3	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0008	4951	6	0	0	3	2	1	copy fasta	EFHC1	chr6	52415342	52502198