Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGO2_chr8_140515156_140640633	0/0	t0003	12029	16	1	2	10	1	2	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0004	12018	16	1	4	10	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0005	12022	16	0	9	7	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0006	12027	7	6	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0007	12028	7	7	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0008	12029	7	0	0	5	1	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0009	12030	6	0	3	3	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0010	12028	4	0	0	4	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0011	12031	4	4	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0012	12029	4	4	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0013	12037	4	4	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0014	12038	4	4	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0015	12025	4	0	0	2	0	2	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0016	12023	4	0	0	4	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0017	12019	4	0	1	2	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0018	12015	4	3	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0019	12016	4	3	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0020	12021	4	0	2	0	1	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0021	12027	3	3	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0022	12028	3	3	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0023	12015	3	0	0	0	0	3	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0024	12018	3	3	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0025	12019	3	0	0	3	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0026	12019	3	1	0	2	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0027	12016	3	1	2	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0028	12020	3	0	0	1	0	2	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0029	12018	3	3	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0030	12028	2	2	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0031	12028	2	2	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0032	12031	2	0	1	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0033	12031	2	0	0	0	0	2	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0034	12038	2	2	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0035	12027	2	1	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0036	12031	2	0	0	2	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0037	12029	2	0	0	2	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0038	12031	2	0	2	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0039	12026	2	0	0	2	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0040	12027	2	0	0	2	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0041	12022	2	0	0	1	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0042	12021	2	0	0	2	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0043	12021	2	0	2	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0044	12030	2	0	2	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0045	12019	2	0	0	0	0	2	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0046	12019	2	0	2	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0047	12016	2	0	1	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0048	12023	2	0	0	2	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0049	12037	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0050	12024	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0051	12031	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0052	12029	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633