JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFHC1_chr6_52415342_52502198	0/0	t0009	4927	6	4	2	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0010	4949	5	0	3	0	1	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0011	4953	5	2	0	1	0	2	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0012	4951	5	0	0	0	2	3	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0013	4949	5	0	3	1	1	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0014	4927	4	3	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0015	4955	3	0	0	3	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0016	4947	3	0	2	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0017	4953	3	3	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0018	4927	3	0	0	3	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0019	4927	3	3	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0020	4927	3	3	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0021	4955	2	2	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0022	4932	2	2	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0023	4961	2	0	1	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0024	4969	2	1	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0025	4957	2	0	1	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0026	4953	2	0	0	2	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0027	4961	2	2	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0028	4963	2	0	2	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0029	4949	2	0	2	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0030	4959	2	1	0	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0031	4947	2	2	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0032	4955	2	0	0	1	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0033	4955	2	1	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0034	4953	2	2	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0035	4951	2	0	0	2	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0036	4941	2	1	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0037	4949	2	1	0	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0038	4933	2	1	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0039	4944	2	0	1	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0040	4929	2	0	0	0	0	2	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0041	4917	2	1	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0042	4936	2	0	1	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0043	4959	2	1	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0044	4950	2	0	0	1	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0045	4944	2	0	0	2	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0046	4934	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0047	4934	1	0	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0048	4963	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0049	4959	1	0	0	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0050	4961	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0051	4957	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0052	4981	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0053	4967	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0054	4965	1	0	0	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0055	4965	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0056	4969	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0057	4963	1	0	0	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0058	4963	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198