JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFHC1_chr6_52415342_52502198	0/0	t0059	4951	1	0	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0060	4961	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0061	4951	1	0	0	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0062	4957	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0063	4957	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0064	4957	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0065	4950	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0066	4955	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0067	4955	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0068	4953	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0069	4955	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0070	4943	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0071	4951	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0072	4954	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0073	4951	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0074	4949	1	0	0	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0075	4937	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0076	4947	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0077	4935	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0078	4941	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0079	4941	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0080	4939	1	0	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0081	4923	1	0	0	0	0	1	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0082	4934	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0083	4934	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0084	4921	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0085	4930	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0086	4929	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0087	4918	1	0	1	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0088	4929	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0089	4934	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0090	4961	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0091	4959	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0092	4953	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0093	4953	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0094	4952	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0095	4949	1	1	0	0	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0096	4948	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0097	4946	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0098	4934	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC1_chr6_52415342_52502198	0/0	t0099	4932	1	0	0	1	0	0	copy fasta	EFHC1	chr6	52415342	52502198
EFHC2_chrX_44142872_44348672	0/1	t0001	1009	73	22	12	29	4	5	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0002	1013	39	14	18	1	0	6	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0003	1019	27	1	4	19	1	2	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0004	1011	22	1	5	11	0	5	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0005	1017	15	0	0	15	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0006	1021	8	5	0	3	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0007	1015	7	1	3	3	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0008	1009	5	5	0	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0009	1013	5	3	2	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672