JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFHC2_chrX_44142872_44348672	0/0	t0010	1023	3	2	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0011	1017	3	1	0	1	0	1	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0012	1009	2	2	0	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	1/0	t0013	1008	1	0	0	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0014	1020	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0015	1014	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0016	1010	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0017	1017	1	1	0	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0018	1015	1	0	1	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0019	1009	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0020	1010	1	0	0	0	0	1	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0021	1007	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0022	1005	1	1	0	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0023	1009	1	0	0	1	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHC2_chrX_44142872_44348672	0/0	t0024	1017	1	1	0	0	0	0	copy fasta	EFHC2	chrX	44142872	44348672
EFHD1_chr2_232628604_232687776	0/0	t0001	1159	169	21	36	87	4	21	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/1	t0002	1159	56	3	7	34	5	6	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	1/0	t0003	1159	55	12	14	16	4	8	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0004	1159	31	3	0	25	1	2	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0005	1159	19	14	1	1	1	2	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0006	1159	18	17	1	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0007	1159	9	8	1	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0008	1159	5	4	1	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0009	1159	3	3	0	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0010	1159	3	1	0	0	1	1	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0011	1159	2	2	0	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0012	1183	1	0	0	1	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0013	1159	1	1	0	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0014	1159	1	0	0	0	0	1	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0015	1159	1	0	0	1	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0016	1132	1	1	0	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0017	1159	1	0	1	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0018	1159	1	0	0	1	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0019	1159	1	0	0	0	0	1	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0020	1159	1	1	0	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0021	1159	1	1	0	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0022	1159	1	1	0	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD1_chr2_232628604_232687776	0/0	t0023	1159	1	1	0	0	0	0	copy fasta	EFHD1	chr2	232628604	232687776
EFHD2_chr1_15404888_15435339	1/0	t0001	1700	235	55	42	101	13	23	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0002	1700	67	12	20	27	1	7	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/1	t0003	1700	63	3	8	36	1	14	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0004	1700	7	0	7	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0005	1700	7	6	1	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0006	1700	7	0	0	7	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0007	1700	6	5	1	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0008	1700	6	6	0	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0009	1700	5	2	3	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0010	1700	4	2	2	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0011	1700	3	3	0	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0012	1700	1	1	0	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339