JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFHD2_chr1_15404888_15435339	0/0	t0013	1700	1	0	0	0	1	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0014	1700	1	1	0	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0015	1700	1	1	0	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0016	1700	1	1	0	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0017	1700	1	0	0	1	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0018	1700	1	1	0	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0019	1700	1	0	1	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0020	1700	1	0	0	0	0	1	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0021	1700	1	0	0	0	0	1	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0022	1700	1	0	0	1	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0023	1700	1	0	0	1	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0024	1700	1	0	1	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFHD2_chr1_15404888_15435339	0/0	t0025	1700	1	1	0	0	0	0	copy fasta	EFHD2	chr1	15404888	15435339
EFL1_chr15_82125233_82267734	1/1	t0001	281	363	77	62	172	14	36	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	t0002	281	4	0	4	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFL1_chr15_82125233_82267734	0/0	t0003	281	1	1	0	0	0	0	copy fasta	EFL1	chr15	82125233	82267734
EFNA1_chr1_155122876_155139899	0/1	t0001	935	181	23	37	90	9	21	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	1/0	t0002	935	137	59	26	21	8	22	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	t0003	935	12	1	2	1	1	7	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	t0004	935	7	7	0	0	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	t0005	935	4	3	1	0	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	t0006	935	4	0	0	4	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	t0007	935	1	1	0	0	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	t0008	935	1	0	0	1	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	t0009	935	1	1	0	0	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	t0010	935	1	0	0	1	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA1_chr1_155122876_155139899	0/0	t0011	935	1	1	0	0	0	0	copy fasta	EFNA1	chr1	155122876	155139899
EFNA2_chr19_1280873_1306431	0/0	t0001	1783	49	13	11	19	1	5	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0002	1782	38	10	8	12	3	5	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/1	t0003	1784	38	3	9	18	2	5	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0004	1785	17	0	8	5	1	3	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0005	1786	9	0	0	6	0	3	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0006	1781	8	1	2	4	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0007	1784	7	0	4	2	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0008	1813	6	6	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0009	1785	6	0	5	1	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0010	1784	5	3	1	0	1	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0011	1780	5	4	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0012	1784	4	4	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0013	1783	4	0	3	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0014	1943	3	0	0	3	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0015	1783	3	3	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	1/0	t0016	1783	3	0	1	1	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0017	1778	3	2	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0018	1785	3	0	0	3	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0019	2026	3	0	2	1	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0020	1784	3	0	3	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0021	1784	2	2	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0022	1812	2	0	1	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0023	1814	2	2	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431