JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFNA2_chr19_1280873_1306431	0/0	t0024	1770	2	0	1	0	1	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0025	1813	2	2	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0026	1772	2	0	0	2	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0027	1942	2	2	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0028	1782	2	0	0	2	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0029	1950	2	1	0	1	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0030	1782	2	2	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0031	1783	2	0	0	2	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0032	1783	2	0	0	0	0	2	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0033	1783	2	2	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0034	1780	2	2	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0035	1785	2	0	2	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0036	1784	1	0	0	1	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0037	1978	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0038	1811	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0039	1808	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0040	1812	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0041	1811	1	0	0	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0042	1813	1	0	0	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0043	1770	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0044	1813	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0045	1812	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0046	1813	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0047	1993	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0048	1950	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0049	1758	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0050	1762	1	0	0	1	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0051	1771	1	0	0	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0052	1940	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0053	1942	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0054	1941	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0055	1900	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0056	1899	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0057	1944	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0058	1944	1	0	0	1	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0059	1951	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0060	1824	1	0	0	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0061	1782	1	0	0	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0062	1825	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0063	1779	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0064	1784	1	0	0	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0065	1785	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0066	1784	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0067	1785	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0068	1786	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0069	1702	1	0	0	1	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0070	1793	1	0	0	1	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0071	1782	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0072	1767	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0073	1942	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431