JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFNA2_chr19_1280873_1306431	0/0	t0074	2028	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0075	1825	1	0	0	0	1	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0076	1779	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0077	1742	1	0	0	0	0	1	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0078	1785	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0079	1786	1	0	1	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0080	1784	1	0	0	1	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0081	1993	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA2_chr19_1280873_1306431	0/0	t0082	1782	1	1	0	0	0	0	copy fasta	EFNA2	chr19	1280873	1306431
EFNA3_chr1_155073837_155092538	0/0	t0001	1101	181	19	41	89	9	23	copy fasta	EFNA3	chr1	155073837	155092538
EFNA3_chr1_155073837_155092538	1/0	t0002	1101	92	20	22	18	7	24	copy fasta	EFNA3	chr1	155073837	155092538
EFNA3_chr1_155073837_155092538	0/0	t0003	1102	56	50	1	1	1	3	copy fasta	EFNA3	chr1	155073837	155092538
EFNA3_chr1_155073837_155092538	0/0	t0004	1101	3	0	2	0	1	0	copy fasta	EFNA3	chr1	155073837	155092538
EFNA3_chr1_155073837_155092538	0/0	t0005	1102	1	1	0	0	0	0	copy fasta	EFNA3	chr1	155073837	155092538
EFNA3_chr1_155073837_155092538	0/1	t0006	1102	1	0	0	0	0	0	copy fasta	EFNA3	chr1	155073837	155092538
EFNA4_chr1_155058740_155074553	1/1	t0001	649	331	94	67	103	18	47	copy fasta	EFNA4	chr1	155058740	155074553
EFNA4_chr1_155058740_155074553	0/0	t0002	649	2	0	0	1	0	1	copy fasta	EFNA4	chr1	155058740	155074553
EFNA4_chr1_155058740_155074553	0/0	t0003	649	1	0	1	0	0	0	copy fasta	EFNA4	chr1	155058740	155074553
EFNA5_chr5_107371894_107675937	0/0	t0001	4686	14	2	5	4	1	2	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0002	4683	14	0	7	5	0	2	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0003	4688	13	3	4	3	2	1	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0004	4687	8	3	1	2	0	2	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0005	4685	5	0	1	3	0	1	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0006	4678	4	4	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0007	4689	4	0	2	0	0	2	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0008	4688	4	0	1	1	0	2	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0009	4691	4	1	3	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0010	4684	4	0	0	3	0	1	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0011	4686	3	2	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0012	4682	3	2	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0013	4682	3	2	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0014	4687	3	1	0	2	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0015	4690	3	0	2	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0016	4683	3	0	0	3	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0017	4674	2	0	1	0	1	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0018	4688	2	2	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0019	4687	2	2	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0020	4688	2	1	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0021	4688	2	0	1	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0022	4690	2	2	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0023	4687	2	0	0	2	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0024	4688	2	0	0	2	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0025	4691	2	2	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0026	4690	2	0	0	2	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0027	4691	2	0	1	0	1	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0028	4682	2	2	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0029	4682	2	0	1	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0030	4683	2	0	0	2	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0031	4682	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0032	4688	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937