JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFNA5_chr5_107371894_107675937	0/0	t0033	4691	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0034	4687	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0035	4690	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0036	4691	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0037	4682	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0038	4682	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0039	4681	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0040	4684	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0041	4689	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0042	4688	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0043	4689	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0044	4680	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0045	4680	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0046	4683	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0047	4682	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0048	4682	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0049	4682	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0050	4681	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0051	4682	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0052	4681	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0053	4683	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0054	4682	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0055	4682	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0056	4683	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0057	4688	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0058	4686	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0059	4686	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0060	4688	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0061	4687	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0062	4687	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0063	4687	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0064	4686	1	0	0	0	1	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0065	4689	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0066	4688	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0067	4689	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0068	4689	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0069	4689	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0070	4689	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0071	4687	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0072	4689	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0073	4689	1	0	0	0	1	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0074	4689	1	0	0	0	0	1	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0075	4690	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0076	4690	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0077	4690	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0078	4691	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0079	4691	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0080	4693	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0081	4692	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0082	4693	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937