JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFNA5_chr5_107371894_107675937	0/0	t0083	4691	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0084	4682	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0085	4681	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0086	4684	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0087	4683	1	0	0	0	1	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0088	4683	1	0	1	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0089	4683	1	0	0	0	1	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0090	4685	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0091	4684	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0092	4684	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0093	4686	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0094	4687	1	0	0	0	1	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0095	4690	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0096	4690	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0097	4685	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0098	4684	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0099	4681	1	0	0	1	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNA5_chr5_107371894_107675937	0/0	t0100	4687	1	1	0	0	0	0	copy fasta	EFNA5	chr5	107371894	107675937
EFNB1_chrX_68824021_68847160	1/1	t0001	2263	116	11	25	64	5	9	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0002	2265	84	16	19	35	4	10	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0003	2267	21	1	10	8	0	2	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0004	2269	17	16	0	0	1	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0005	2267	14	2	1	10	0	1	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0006	2263	8	2	0	4	0	2	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0007	2260	8	8	0	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0008	2263	4	0	0	4	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0009	2271	4	4	0	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0010	2269	4	4	0	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0011	2265	3	1	0	2	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0012	2263	3	0	0	2	0	1	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0013	2263	3	3	0	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0014	2260	3	3	0	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0015	2263	3	0	0	0	0	3	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0016	2264	2	0	0	2	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0017	2264	2	0	1	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0018	2266	2	0	0	2	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0019	2262	2	1	1	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0020	2265	2	0	0	2	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0021	2263	2	0	0	0	2	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0022	2263	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0023	2262	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0024	2269	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0025	2267	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0026	2262	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0027	2265	1	1	0	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0028	2264	1	0	0	0	0	1	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0029	2262	1	0	0	0	0	1	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0030	2264	1	0	0	0	0	1	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0031	2261	1	0	1	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0032	2265	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160