JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFNB1_chrX_68824021_68847160	0/0	t0033	2263	1	1	0	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0034	2266	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0035	2267	1	0	0	0	1	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0036	2266	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0037	2265	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0038	2268	1	0	0	0	0	1	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0039	2267	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0040	2263	1	0	0	0	0	1	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0041	2265	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0042	2264	1	1	0	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0043	2263	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0044	2265	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0045	2268	1	0	1	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0046	2269	1	0	1	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0047	2263	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0048	2268	1	0	0	1	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB1_chrX_68824021_68847160	0/0	t0049	2262	1	1	0	0	0	0	copy fasta	EFNB1	chrX	68824021	68847160
EFNB2_chr13_106484745_106540662	0/0	t0001	3993	68	6	8	48	2	4	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0002	3993	61	6	7	42	1	5	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/1	t0003	3993	37	11	10	7	1	7	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0004	3993	37	7	13	15	0	2	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0005	3993	36	3	17	6	0	10	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0006	3993	32	11	6	9	3	3	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	1/0	t0007	3994	8	7	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0008	3993	5	0	1	2	2	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0009	3993	5	0	0	4	0	1	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0010	3994	4	0	2	0	1	1	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0011	3994	3	3	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0012	3993	3	3	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0013	4002	2	2	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0014	3993	2	0	2	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0015	3993	2	0	1	0	0	1	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0016	3993	2	2	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0017	4002	2	2	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0018	3993	2	2	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0019	3994	2	1	1	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0020	3993	2	2	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0021	3993	2	2	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0022	3993	2	0	0	2	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0023	3993	1	0	0	0	0	1	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0024	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0025	3993	1	0	1	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0026	3993	1	0	0	1	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0027	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0028	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0029	3994	1	0	1	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0030	3993	1	0	0	1	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0031	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0032	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0033	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662