JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFNB2_chr13_106484745_106540662	0/0	t0034	3993	1	0	1	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0035	3993	1	0	0	0	0	1	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0036	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0037	4002	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0038	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0039	3994	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0040	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0041	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0042	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0043	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0044	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0045	3993	1	0	0	1	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0046	4002	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0047	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0048	3993	1	0	0	1	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0049	3994	1	0	1	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0050	3993	1	0	0	0	0	1	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0051	3993	1	0	0	0	0	1	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0052	3993	1	0	0	0	0	1	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0053	3993	1	0	0	1	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0054	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0055	3993	1	0	0	1	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0056	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0057	3993	1	1	0	0	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0058	3993	1	0	0	0	0	1	copy fasta	EFNB2	chr13	106484745	106540662
EFNB2_chr13_106484745_106540662	0/0	t0059	3993	1	0	0	1	0	0	copy fasta	EFNB2	chr13	106484745	106540662
EFNB3_chr17_7700202_7716372	1/0	t0001	2194	192	50	39	69	7	26	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/1	t0002	2194	127	7	34	67	7	11	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0003	2194	45	4	5	35	0	1	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0004	2194	18	12	0	3	0	3	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0005	2196	9	8	1	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0006	2194	7	3	2	0	2	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0007	2194	5	0	0	5	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0008	2194	4	4	0	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0009	2194	3	3	0	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0010	2194	2	1	1	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0011	2194	2	0	0	0	0	2	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0012	2194	2	0	0	2	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0013	2194	2	0	0	2	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0014	2194	2	0	0	0	2	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0015	2194	2	0	1	0	0	1	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0016	2194	1	0	0	1	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0017	2194	1	0	0	1	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0018	2194	1	0	0	1	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0019	2194	1	1	0	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0020	2194	1	0	0	1	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0021	2194	1	0	0	1	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0022	2194	1	1	0	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0023	2194	1	0	1	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0024	2194	1	1	0	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372