Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGO2_chr8_140515156_140640633	0/0	t0053	12026	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0054	12032	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0055	12028	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0056	12031	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0057	12028	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0058	12029	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0059	12026	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0060	12029	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0061	12030	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0062	12033	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0063	12026	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0064	12027	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0065	12036	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0066	12036	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0067	12037	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0068	12027	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0069	12037	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0070	12037	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0071	12039	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0072	12036	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0073	12027	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0074	12028	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0075	12021	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0076	12021	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0077	12021	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0078	12024	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0079	12026	1	0	0	0	1	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0080	12029	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0081	12028	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0082	12029	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0083	12028	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0084	12028	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0085	12030	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0086	12029	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0087	12029	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0088	12030	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0089	12027	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0090	12018	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0091	12015	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0092	12017	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0093	12018	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0094	12022	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0095	12021	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0096	12019	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0097	12021	1	0	0	0	1	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0098	12017	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0099	12018	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0100	12018	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0101	12021	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0102	12022	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633