JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFNB3_chr17_7700202_7716372	0/0	t0025	2194	1	0	0	1	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0026	2194	1	0	0	1	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFNB3_chr17_7700202_7716372	0/0	t0027	2194	1	1	0	0	0	0	copy fasta	EFNB3	chr17	7700202	7716372
EFR3A_chr8_131899093_132018642	0/0	t0001	2968	141	21	19	91	2	8	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/1	t0002	2968	134	30	29	55	6	13	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0003	2968	53	4	14	23	3	9	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	1/0	t0004	2968	16	4	3	1	2	5	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0005	2968	10	0	0	10	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0006	2968	6	4	0	0	0	2	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0007	2968	6	6	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0008	2968	5	5	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0009	2968	5	0	4	0	1	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0010	2968	5	5	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0011	2968	4	0	4	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0012	2968	4	0	0	4	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0013	2968	4	3	1	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0014	2968	2	0	0	2	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0015	2968	2	0	1	0	1	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0016	2968	2	0	2	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0017	2968	2	2	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0018	2968	2	0	0	0	1	1	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0019	2968	1	1	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0020	2968	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0021	2968	1	0	0	0	0	1	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0022	2968	1	1	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0023	2968	1	1	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0024	2968	1	0	0	1	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0025	2968	1	0	1	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0026	2968	1	0	0	0	0	1	copy fasta	EFR3A	chr8	131899093	132018642
EFR3A_chr8_131899093_132018642	0/0	t0027	2968	1	1	0	0	0	0	copy fasta	EFR3A	chr8	131899093	132018642
EFR3B_chr2_25037076_25164135	0/0	t0001	5034	79	29	18	20	5	7	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0002	5033	44	2	10	26	0	6	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0003	5033	30	0	3	23	0	4	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0004	5035	16	10	0	6	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0005	5033	16	13	2	0	0	1	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0006	5033	15	0	4	2	2	7	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0007	5034	11	0	3	5	0	3	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0008	5034	10	0	0	10	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	1/1	t0009	5033	9	0	5	0	1	1	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0010	5034	7	1	1	5	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0011	5033	7	2	1	3	0	1	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0012	5032	5	0	0	5	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0013	5033	5	0	0	5	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0014	5033	4	4	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0015	5034	4	2	0	0	0	2	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0016	5034	3	3	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0017	5035	3	3	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0018	5034	2	2	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0019	5033	2	2	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0020	5034	2	0	0	2	0	0	copy fasta	EFR3B	chr2	25037076	25164135