JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFR3B_chr2_25037076_25164135	0/0	t0021	5034	1	0	0	0	1	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0022	5033	1	0	1	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0023	5034	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0024	5033	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0025	5034	1	0	1	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0026	5035	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0027	5034	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0028	5033	1	0	1	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0029	5033	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0030	5035	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0031	5033	1	0	1	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0032	5033	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0033	5034	1	0	1	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0034	5034	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0035	5034	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0036	5034	1	0	1	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0037	5035	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0038	5035	1	0	1	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0039	5032	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0040	5033	1	0	1	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0041	5033	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0042	5033	1	0	0	0	0	1	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0043	5034	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0044	5033	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0045	5033	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0046	5033	1	0	0	0	1	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0047	5033	1	0	0	0	0	1	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0048	5034	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0049	5033	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0050	5035	1	0	0	1	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0051	5033	1	0	1	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFR3B_chr2_25037076_25164135	0/0	t0052	5034	1	1	0	0	0	0	copy fasta	EFR3B	chr2	25037076	25164135
EFS_chr14_23351406_23370172	1/1	t0001	968	223	18	50	114	9	30	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	t0002	968	165	78	16	56	3	12	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	t0003	968	5	4	1	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	t0004	968	5	0	0	4	0	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	t0005	968	3	0	0	3	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	t0006	968	1	0	0	0	0	1	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	t0007	968	1	0	1	0	0	0	copy fasta	EFS	chr14	23351406	23370172
EFS_chr14_23351406_23370172	0/0	t0008	968	1	0	0	1	0	0	copy fasta	EFS	chr14	23351406	23370172
EFTUD2_chr17_44844948_44904445	0/0	t0001	1408	124	46	17	38	6	17	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	1/0	t0002	1408	112	12	23	61	6	9	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	t0003	1408	62	11	9	35	1	6	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	t0004	1408	27	9	2	16	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/1	t0005	1408	18	3	12	0	1	1	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	t0006	1408	8	2	2	0	0	4	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	t0007	1408	7	7	0	0	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	t0008	1408	5	0	3	0	1	1	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	t0009	1408	2	0	1	0	1	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	t0010	1408	2	0	2	0	0	0	copy fasta	EFTUD2	chr17	44844948	44904445