JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EFTUD2_chr17_44844948_44904445	0/0	t0011	1408	1	0	1	0	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	t0012	1408	1	1	0	0	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EFTUD2_chr17_44844948_44904445	0/0	t0013	1408	1	1	0	0	0	0	copy fasta	EFTUD2	chr17	44844948	44904445
EGFL6_chrX_13564601_13638575	1/1	t0001	742	129	31	31	49	4	12	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0002	742	63	8	5	44	2	4	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0003	742	40	5	7	10	5	13	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0004	742	35	18	6	11	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0005	742	10	5	0	4	0	1	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0006	742	8	1	1	6	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0007	742	7	2	0	5	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0008	742	5	1	0	3	0	1	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0009	743	1	0	0	1	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0010	742	1	1	0	0	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0011	742	1	0	0	1	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0012	742	1	0	0	0	0	1	copy fasta	EGFL6	chrX	13564601	13638575
EGFL6_chrX_13564601_13638575	0/0	t0013	741	1	0	0	1	0	0	copy fasta	EGFL6	chrX	13564601	13638575
EGFL7_chr9_136657916_136677678	0/1	t0001	938	322	59	48	169	10	35	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0002	938	24	4	11	4	4	1	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	1/0	t0003	938	17	13	0	1	1	1	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0004	938	14	3	1	8	1	1	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0005	938	13	3	7	0	0	3	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0006	938	13	8	1	4	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0007	938	8	0	4	0	0	4	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0008	938	7	1	6	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0009	938	2	2	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0010	938	2	1	1	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0011	938	1	1	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0012	938	1	0	1	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0013	938	1	1	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0014	938	1	1	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0015	938	1	1	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0016	938	1	0	0	1	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0017	938	1	1	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0018	953	1	0	0	1	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0019	938	1	0	0	0	0	1	copy fasta	EGFL7	chr9	136657916	136677678
EGFL7_chr9_136657916_136677678	0/0	t0020	938	1	1	0	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL8_chr6_32159595_32173281	0/1	t0001	417	383	80	69	187	12	34	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	t0002	414	16	7	7	0	2	0	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	t0003	418	15	0	0	13	0	2	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	t0004	417	11	3	4	1	1	2	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	t0005	417	6	0	0	1	1	4	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	t0006	418	1	0	0	1	0	0	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	t0007	417	1	0	0	1	0	0	copy fasta	EGFL8	chr6	32159595	32173281
EGFLAM_chr5_38253559_38470480	1/1	t0001	1691	100	17	24	38	5	14	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0002	1691	16	9	4	0	1	2	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0003	1691	12	5	3	1	2	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0004	1691	7	5	1	0	0	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0005	1691	7	6	1	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0006	1691	6	6	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0007	1691	5	3	0	2	0	0	copy fasta	EGFLAM	chr5	38253559	38470480