JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EGFLAM_chr5_38253559_38470480	0/0	t0008	1691	4	1	1	2	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0009	1689	4	4	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0010	1691	3	3	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0011	1691	3	3	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0012	1691	2	2	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0013	1685	2	2	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0014	1691	2	1	1	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0015	1691	2	1	1	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0016	1691	2	2	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0017	1691	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0018	1691	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0019	1691	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0020	1691	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0021	1691	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0022	1691	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0023	1691	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0024	1691	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0025	1691	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0026	1691	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0027	1685	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0028	1689	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	t0029	1689	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFR_chr7_55014017_55216628	0/0	t0001	6274	43	17	9	7	2	8	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0002	6277	22	2	1	15	2	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0003	6273	20	13	4	1	0	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0004	6274	13	8	0	1	0	4	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0005	6273	12	1	5	1	3	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0006	6273	12	3	4	0	1	4	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0007	6273	11	2	1	7	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0008	6273	10	5	2	1	0	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0009	6273	9	1	4	0	2	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0010	6273	7	0	4	0	1	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0011	6277	6	0	3	0	0	3	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	1/0	t0012	6273	4	0	3	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0013	6273	4	0	4	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/1	t0014	6273	4	0	1	0	0	2	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0015	6277	3	0	3	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0016	6276	3	3	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0017	6274	3	0	1	2	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0018	6275	3	3	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0019	6276	3	3	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0020	6273	3	0	2	0	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0021	6274	2	0	2	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0022	6277	2	1	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0023	6277	2	2	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0024	6274	2	2	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0025	6274	2	2	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0026	6277	2	0	1	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0027	6277	2	0	1	0	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0028	6274	2	2	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628