JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EGFR_chr7_55014017_55216628	0/0	t0029	6277	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0030	6274	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0031	6273	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0032	6273	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0033	6274	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0034	6277	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0035	6277	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0036	6277	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0037	6274	1	0	0	0	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0038	6274	1	0	0	0	0	1	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0039	6274	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0040	6277	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0041	6274	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0042	6274	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0043	6274	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0044	6273	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0045	6273	1	0	0	0	1	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0046	6273	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0047	6273	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0048	6273	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0049	6273	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0050	6273	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0051	6275	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0052	6274	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0053	6274	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0054	6273	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0055	6274	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0056	6277	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0057	6277	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0058	6274	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0059	6274	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0060	6273	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0061	6276	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0062	6273	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0063	6273	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0064	6276	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0065	6276	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0066	6275	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	t0067	6275	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGF_chr4_109907883_110018766	0/1	t0001	2765	77	6	17	39	4	10	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0002	2764	49	6	14	18	3	8	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0003	2764	37	1	4	29	1	2	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0004	2764	37	4	8	24	0	1	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0005	2765	28	0	0	23	0	5	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0006	2765	24	4	3	14	0	3	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0007	2764	18	18	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0008	2766	14	0	0	12	0	2	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0009	2766	11	1	3	5	0	2	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0010	2765	8	0	1	6	0	1	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0011	2764	8	7	1	0	0	0	copy fasta	EGF	chr4	109907883	110018766