JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EGF_chr4_109907883_110018766	0/0	t0012	2764	6	2	0	3	1	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0013	2765	6	0	1	5	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0014	2764	5	5	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0015	2764	5	2	0	3	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0016	2764	5	3	2	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0017	2763	5	5	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0018	2765	4	1	0	2	0	1	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0019	2764	4	4	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0020	2764	3	3	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0021	2766	3	1	0	2	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0022	2764	2	2	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0023	2765	2	2	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0024	2764	2	2	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0025	2764	2	0	0	2	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0026	2765	2	0	0	2	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0027	2764	2	0	0	2	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0028	2763	1	0	1	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0029	2765	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0030	2764	1	0	0	1	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0031	2764	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0032	2764	1	0	0	1	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0033	2763	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0034	2765	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0035	2765	1	0	0	0	1	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	1/0	t0036	2765	1	0	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0037	2765	1	0	0	0	0	1	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0038	2764	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0039	2764	1	0	0	0	0	1	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0040	2764	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0041	2765	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0042	2765	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0043	2765	1	0	0	0	0	1	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0044	2765	1	0	0	1	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0045	2764	1	1	0	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	t0046	2764	1	0	1	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGLN1_chr1_231358756_231427287	0/0	t0001	3056	133	22	22	67	6	16	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	1/1	t0002	3055	125	23	19	59	3	19	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0003	3054	12	5	2	1	3	1	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0004	3055	10	0	0	10	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0005	3056	8	8	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0006	3056	8	0	1	7	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0007	3056	6	6	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0008	3054	4	4	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0009	3052	4	1	0	3	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0010	3051	3	3	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0011	3055	2	2	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0012	3056	2	0	0	2	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0013	3055	2	2	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0014	3055	2	1	1	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0015	3055	2	0	0	2	0	0	copy fasta	EGLN1	chr1	231358756	231427287