JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EGLN1_chr1_231358756_231427287	0/0	t0016	3056	2	0	0	2	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0017	3055	1	1	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0018	3054	1	1	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0019	3054	1	1	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0020	3056	1	0	0	1	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0021	3055	1	0	0	1	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0022	3056	1	0	0	1	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0023	3055	1	0	0	1	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0024	3056	1	1	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0025	3055	1	1	0	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0026	3056	1	0	0	1	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0027	3055	1	0	0	1	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0028	3055	1	0	1	0	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN1_chr1_231358756_231427287	0/0	t0029	3055	1	0	0	1	0	0	copy fasta	EGLN1	chr1	231358756	231427287
EGLN2_chr19_40794191_40813434	1/1	t0001	877	283	88	38	111	11	33	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0002	877	116	2	24	70	7	13	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0003	877	5	1	4	0	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0004	877	3	0	0	3	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0005	877	3	2	1	0	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0006	877	3	3	0	0	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0007	877	2	2	0	0	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0008	877	1	0	0	0	0	1	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0009	877	1	0	0	1	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0010	877	1	0	0	1	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0011	865	1	0	0	0	0	1	copy fasta	EGLN2	chr19	40794191	40813434
EGLN2_chr19_40794191_40813434	0/0	t0012	877	1	0	1	0	0	0	copy fasta	EGLN2	chr19	40794191	40813434
EGLN3_chr14_33919227_33956074	0/0	t0001	1992	101	24	23	35	3	16	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0002	1990	94	7	10	65	4	8	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/1	t0003	1990	91	13	19	48	7	3	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	1/0	t0004	1987	21	12	3	3	1	1	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0005	1994	16	0	3	10	0	3	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0006	1993	15	0	6	8	0	1	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0007	1991	11	4	0	3	0	4	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0008	1987	10	3	2	5	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0009	1990	10	10	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0010	1988	7	7	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0011	1991	7	3	2	1	0	1	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0012	1992	6	1	1	4	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0013	1989	5	5	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0014	1991	4	0	0	4	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0015	1989	3	2	0	0	0	1	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0016	1992	2	0	0	2	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0017	1992	2	0	0	2	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0018	1990	2	2	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0019	1989	2	0	0	2	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0020	1987	1	0	0	1	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0021	1989	1	0	0	1	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0022	1989	1	0	0	1	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0023	1992	1	0	1	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0024	1990	1	0	0	0	0	1	copy fasta	EGLN3	chr14	33919227	33956074