JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EGLN3_chr14_33919227_33956074	0/0	t0025	1987	1	1	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0026	1988	1	1	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0027	1990	1	1	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0028	1990	1	1	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0029	1990	1	0	0	1	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0030	1990	1	0	0	0	0	1	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0031	1991	1	1	0	0	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0032	1994	1	0	0	0	1	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0033	1994	1	0	0	1	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGLN3_chr14_33919227_33956074	0/0	t0034	1990	1	0	0	1	0	0	copy fasta	EGLN3	chr14	33919227	33956074
EGR1_chr5_138460479_138474303	1/1	t0001	1506	308	66	63	128	12	37	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0002	1507	10	2	3	0	2	3	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0003	1508	10	3	5	0	2	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0004	1505	7	0	1	6	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0005	1506	5	2	0	0	0	3	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0006	1506	4	0	3	0	0	1	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0007	1506	4	2	2	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0008	1506	3	2	1	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0009	1506	2	2	0	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0010	1506	1	1	0	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0011	1506	1	0	1	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0012	1506	1	1	0	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0013	1506	1	0	1	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0014	1506	1	0	0	1	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0015	1506	1	0	0	1	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR1_chr5_138460479_138474303	0/0	t0016	1506	1	1	0	0	0	0	copy fasta	EGR1	chr5	138460479	138474303
EGR2_chr10_62806996_62821366	0/1	t0001	1548	365	83	64	162	14	41	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0002	1548	40	0	4	34	0	2	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0003	1540	3	0	0	3	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0004	1548	2	0	0	1	0	1	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0005	1548	2	0	2	0	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0006	1548	2	1	1	0	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0007	1548	2	2	0	0	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0008	1548	1	0	0	1	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0009	1549	1	0	0	1	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	1/0	t0010	1549	1	0	0	0	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0011	1548	1	0	1	0	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0012	1548	1	1	0	0	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0013	1548	1	0	0	1	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0014	1548	1	0	0	1	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0015	1548	1	0	0	1	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0016	1548	1	1	0	0	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR2_chr10_62806996_62821366	0/0	t0017	1548	1	0	0	1	0	0	copy fasta	EGR2	chr10	62806996	62821366
EGR3_chr8_22682659_22698480	1/0	t0001	3351	100	15	13	54	3	14	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/1	t0002	3351	98	3	42	30	7	15	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0003	3357	36	1	6	27	0	2	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0004	3352	22	21	1	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0005	3357	18	0	2	16	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0006	3351	17	13	1	0	1	2	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0007	3351	14	13	1	0	0	0	copy fasta	EGR3	chr8	22682659	22698480