JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EGR3_chr8_22682659_22698480	0/0	t0008	3351	11	3	1	4	1	2	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0009	3352	9	0	4	0	3	2	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0010	3351	7	6	1	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0011	3351	4	0	0	4	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0012	3351	3	3	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0013	3352	2	0	1	0	0	1	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0014	3351	2	0	1	0	0	1	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0015	3351	2	0	2	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0016	3352	2	2	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0017	3352	2	1	1	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0018	3357	2	0	0	0	2	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0019	3357	2	0	0	2	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0020	3331	1	0	0	0	0	1	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0021	3351	1	0	0	1	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0022	3352	1	0	1	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0023	3351	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0024	3351	1	0	0	0	1	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0025	3387	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0026	3339	1	0	0	1	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0027	3351	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0028	3351	1	0	1	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0029	3351	1	0	0	1	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0030	3352	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0031	3351	1	0	1	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0032	3351	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0033	3351	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0034	3357	1	0	0	1	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0035	3357	1	0	0	1	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0036	3357	1	0	0	1	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0037	3348	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0038	3349	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0039	3348	1	1	0	0	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR3_chr8_22682659_22698480	0/0	t0040	3351	1	0	0	1	0	0	copy fasta	EGR3	chr8	22682659	22698480
EGR4_chr2_73285929_73298548	1/1	t0001	760	207	39	52	70	13	31	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	t0002	760	131	36	14	70	1	10	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	t0003	760	9	8	1	0	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	t0004	760	7	6	1	0	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	t0005	760	1	1	0	0	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	t0006	760	1	0	0	0	0	1	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	t0007	760	1	1	0	0	0	0	copy fasta	EGR4	chr2	73285929	73298548
EGR4_chr2_73285929_73298548	0/0	t0008	760	1	1	0	0	0	0	copy fasta	EGR4	chr2	73285929	73298548
EHBP1L1_chr11_65571053_65597650	0/1	t0001	599	214	39	47	85	12	30	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	1/0	t0002	599	193	55	25	92	4	16	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	t0003	599	3	0	0	3	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	t0004	599	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1L1_chr11_65571053_65597650	0/0	t0005	599	1	1	0	0	0	0	copy fasta	EHBP1L1	chr11	65571053	65597650
EHBP1_chr2_62700713_63051487	1/1	t0001	1623	160	46	30	50	9	23	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	t0002	1623	34	1	10	19	1	3	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	t0003	1623	2	2	0	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHBP1_chr2_62700713_63051487	0/0	t0004	1623	1	0	0	1	0	0	copy fasta	EHBP1	chr2	62700713	63051487