JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EHBP1_chr2_62700713_63051487	0/0	t0005	1623	1	1	0	0	0	0	copy fasta	EHBP1	chr2	62700713	63051487
EHD1_chr11_64846642_64883621	0/0	t0001	2849	119	9	20	73	4	13	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0002	2850	68	0	3	54	1	10	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0003	2849	38	5	18	3	4	8	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0004	2850	16	10	2	2	1	1	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0005	2850	10	9	1	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0006	2848	9	7	2	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0007	2849	9	9	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0008	2850	8	0	0	8	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/1	t0009	2849	6	1	2	0	0	2	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0010	2848	5	5	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0011	2849	5	5	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0012	2849	4	4	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0013	2848	4	4	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0014	2849	3	3	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0015	2850	3	2	1	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0016	2850	3	3	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0017	2849	2	2	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0018	2850	2	2	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	1/0	t0019	2849	2	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0020	2850	2	2	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0021	2849	2	2	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0022	2849	2	0	0	2	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0023	2849	2	0	2	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0024	2849	2	0	0	2	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0025	2849	2	0	0	0	0	2	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0026	2850	2	2	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0027	2848	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0028	2849	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0029	2849	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0030	2850	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0031	2849	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0032	2850	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0033	2849	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0034	2849	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0035	2848	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0036	2849	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0037	2849	1	0	1	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0038	2849	1	0	0	0	0	1	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0039	2849	1	0	0	0	0	1	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0040	2849	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0041	2850	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0042	2849	1	0	0	0	0	1	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0043	2850	1	0	1	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0044	2849	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0045	2850	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0046	2850	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0047	2850	1	0	0	0	0	1	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0048	2849	1	0	1	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD1_chr11_64846642_64883621	0/0	t0049	2850	1	0	0	1	0	0	copy fasta	EHD1	chr11	64846642	64883621