Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGO2_chr8_140515156_140640633	0/0	t0103	12016	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0104	12016	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0105	12018	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0106	12020	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0107	12019	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0108	12020	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0109	12021	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0110	12021	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0111	12021	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0112	12022	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0113	12019	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0114	12020	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0115	12021	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0116	12021	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0117	12021	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0118	12021	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0119	12016	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0120	12028	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0121	12029	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0122	12029	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0123	12016	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0124	12022	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0125	12023	1	0	0	0	0	1	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0126	12017	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0127	12016	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0128	12020	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0129	12016	1	0	0	0	1	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0130	12016	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0131	12017	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0132	12017	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	1/0	t0133	12016	1	0	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0134	12018	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0135	12023	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0136	12024	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0137	12018	1	1	0	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0138	12016	1	0	0	0	1	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0139	12030	1	0	1	0	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0140	12031	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0141	12018	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0142	12021	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO2_chr8_140515156_140640633	0/0	t0143	12040	1	0	0	1	0	0	copy fasta	AGO2	chr8	140515156	140640633
AGO3_chr1_35926105_36077500	0/0	t0001	17078	48	8	9	27	1	3	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0002	17078	26	0	8	17	0	1	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0003	17078	15	4	1	9	0	1	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0004	17078	13	2	2	9	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	1/0	t0005	17078	13	3	4	0	2	3	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0006	17081	8	0	1	7	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0007	17074	7	0	0	6	0	1	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0008	17077	6	6	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0009	17079	6	2	2	2	0	0	copy fasta	AGO3	chr1	35926105	36077500