JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EHD1_chr11_64846642_64883621	0/0	t0050	2850	1	1	0	0	0	0	copy fasta	EHD1	chr11	64846642	64883621
EHD2_chr19_47708422_47748134	0/0	t0001	1880	178	7	41	87	11	32	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	1/1	t0002	1875	118	14	20	70	4	8	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0003	1872	37	31	6	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0004	1881	15	15	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0005	1880	10	1	4	0	3	2	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0006	1876	8	7	1	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0007	1876	8	8	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0008	1872	5	5	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0009	1875	3	3	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0010	1880	3	3	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0011	1875	2	0	0	2	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0012	1880	1	0	1	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0013	1880	1	1	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0014	1875	1	0	0	1	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0015	1880	1	0	1	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0016	1880	1	0	0	0	0	1	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0017	1872	1	1	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0018	1880	1	0	0	0	0	1	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0019	1876	1	1	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0020	1872	1	0	1	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0021	1880	1	0	1	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD2_chr19_47708422_47748134	0/0	t0022	1875	1	1	0	0	0	0	copy fasta	EHD2	chr19	47708422	47748134
EHD3_chr2_31229152_31274451	0/0	t0001	3205	98	8	23	50	3	14	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0002	3199	22	1	5	14	1	1	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0003	3207	19	3	4	7	0	5	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0004	3218	19	6	1	11	0	1	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	1/0	t0005	3218	17	0	4	9	3	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0006	3203	16	0	0	16	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0007	3199	14	5	1	8	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0008	3205	14	0	2	12	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0009	3218	10	2	3	3	2	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0010	3199	6	6	0	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0011	3222	6	0	3	0	0	3	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0012	3216	5	5	0	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0013	3204	5	0	0	5	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0014	3220	5	5	0	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0015	3199	4	0	0	4	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0016	3203	4	0	0	4	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0017	3205	4	0	1	0	0	3	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0018	3209	4	0	0	0	0	4	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0019	3216	4	3	1	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0020	3220	4	4	0	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0021	3220	4	4	0	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0022	3203	3	0	0	2	1	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0023	3205	3	1	2	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0024	3205	3	0	0	3	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0025	3218	3	1	2	0	0	0	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0026	3224	3	0	2	0	0	1	copy fasta	EHD3	chr2	31229152	31274451
EHD3_chr2_31229152_31274451	0/0	t0027	3203	2	0	0	2	0	0	copy fasta	EHD3	chr2	31229152	31274451