JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EHD4_chr15_41890933_41977557	0/0	t0032	4776	1	0	0	1	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0033	4776	1	0	0	1	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0034	4776	1	0	1	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0035	4776	1	0	1	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0036	4776	1	0	0	0	0	1	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0037	4777	1	1	0	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0038	4777	1	1	0	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0039	4777	1	1	0	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0040	4777	1	1	0	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0041	4777	1	1	0	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0042	4777	1	1	0	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0043	4777	1	1	0	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0044	4777	1	1	0	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0045	4777	1	0	1	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0046	4777	1	0	1	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0047	4777	1	1	0	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0048	4777	1	0	1	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0049	4777	1	0	0	0	1	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0050	4777	1	0	1	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0051	4776	1	0	1	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0052	4776	1	0	0	1	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHD4_chr15_41890933_41977557	0/0	t0053	4777	1	1	0	0	0	0	copy fasta	EHD4	chr15	41890933	41977557
EHF_chr11_34616093_34668288	0/0	t0001	4497	53	2	22	27	1	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0002	4497	50	4	16	16	3	11	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0003	4497	36	0	3	33	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0004	4497	26	1	9	13	0	3	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0005	4497	24	5	5	7	0	7	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0006	4497	19	0	0	19	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0007	4497	18	1	3	11	0	3	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0008	4497	17	0	2	12	1	2	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0009	4497	14	0	0	13	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0010	4497	13	1	0	10	0	2	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0011	4497	9	1	1	6	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0012	4497	9	9	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0013	4497	7	7	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0014	4497	7	6	1	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0015	4497	6	0	0	1	1	4	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0016	4497	5	3	1	0	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0017	4497	5	4	1	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0018	4497	5	0	2	0	3	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0019	4497	3	3	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0020	4497	3	0	0	2	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0021	4497	3	3	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0022	4497	3	3	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0023	4497	3	0	3	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0024	4497	2	1	0	0	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0025	4497	2	0	0	2	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0026	4497	2	0	0	2	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0027	4497	2	0	0	0	0	2	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0028	4497	2	0	0	0	2	0	copy fasta	EHF	chr11	34616093	34668288