JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EHF_chr11_34616093_34668288	0/0	t0029	4497	2	0	0	2	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0030	4497	2	0	1	0	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0031	4497	2	2	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0032	4497	2	2	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0033	4497	2	1	0	0	1	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0034	4497	2	2	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0035	4497	2	2	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0036	4497	2	2	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0037	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0038	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0039	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0040	4497	1	0	0	0	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	1/0	t0041	4497	1	0	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0042	4497	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0043	4497	1	0	0	0	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0044	4497	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0045	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0046	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0047	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0048	4497	1	0	1	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0049	4497	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0050	4497	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0051	4480	1	0	1	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0052	4497	1	0	1	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0053	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0054	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0055	4497	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0056	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0057	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/1	t0058	4497	1	0	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0059	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0060	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0061	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0062	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0063	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0064	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0065	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0066	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0067	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0068	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0069	4497	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0070	4497	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0071	4497	1	0	1	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0072	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0073	4497	1	0	1	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0074	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0075	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0076	4497	1	0	0	0	0	1	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0077	4497	1	0	1	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0078	4497	1	0	0	1	0	0	copy fasta	EHF	chr11	34616093	34668288