JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EHF_chr11_34616093_34668288	0/0	t0079	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0080	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0081	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHF_chr11_34616093_34668288	0/0	t0082	4497	1	1	0	0	0	0	copy fasta	EHF	chr11	34616093	34668288
EHHADH_chr3_185185624_185259049	1/1	t0001	1630	262	43	41	139	11	26	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0002	1628	34	1	9	19	1	4	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0003	1628	27	22	5	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0004	1628	9	9	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0005	1628	5	5	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0006	1628	3	3	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0007	1628	2	2	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0008	1630	2	0	0	2	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0009	1628	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0010	1630	1	0	1	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0011	1630	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHHADH_chr3_185185624_185259049	0/0	t0012	1628	1	1	0	0	0	0	copy fasta	EHHADH	chr3	185185624	185259049
EHMT1_chr9_137614005_137841127	1/1	t0001	1199	167	63	44	26	8	24	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	t0002	1199	2	0	0	2	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT1_chr9_137614005_137841127	0/0	t0003	1199	1	1	0	0	0	0	copy fasta	EHMT1	chr9	137614005	137841127
EHMT2_chr6_31874759_31902698	0/1	t0001	347	391	93	78	159	17	43	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	t0002	347	18	1	4	11	1	1	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	t0003	347	2	0	2	0	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EHMT2_chr6_31874759_31902698	0/0	t0004	347	2	0	0	2	0	0	copy fasta	EHMT2	chr6	31874759	31902698
EI24_chr11_125564477_125589684	0/0	t0001	1165	67	10	5	39	3	10	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0002	1171	42	7	11	21	1	2	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/1	t0003	1166	35	6	5	17	4	2	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0004	1160	34	2	7	15	3	7	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0005	1172	33	11	5	14	0	3	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0006	1173	18	6	0	11	0	1	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0007	1167	15	9	3	1	0	2	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0008	1171	15	0	4	11	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0009	1169	13	5	3	3	0	2	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0010	1161	13	1	2	8	1	1	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0011	1172	13	0	3	10	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0012	1169	10	2	6	0	1	1	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0013	1161	7	0	6	0	0	1	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0014	1174	6	4	0	2	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0015	1170	5	3	1	1	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0016	1162	5	0	3	2	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0017	1170	4	1	1	0	0	2	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0018	1168	3	3	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0019	1173	3	0	0	3	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0020	1168	2	1	1	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0021	1159	2	0	0	1	1	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0022	1158	2	1	0	1	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0023	1157	2	2	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	1/0	t0024	1169	2	1	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0025	1168	1	1	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0026	1180	1	0	0	1	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0027	1179	1	0	0	1	0	0	copy fasta	EI24	chr11	125564477	125589684