JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EI24_chr11_125564477_125589684	0/0	t0028	1237	1	0	0	1	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0029	1165	1	1	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0030	1154	1	1	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0031	1151	1	1	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0032	1168	1	1	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0033	1162	1	1	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0034	1169	1	1	0	0	0	0	copy fasta	EI24	chr11	125564477	125589684
EI24_chr11_125564477_125589684	0/0	t0035	1170	1	0	0	1	0	0	copy fasta	EI24	chr11	125564477	125589684
EID1_chr15_48873134_48885173	1/1	t0001	1477	304	60	61	128	17	36	copy fasta	EID1	chr15	48873134	48885173
EID1_chr15_48873134_48885173	0/0	t0002	1477	111	21	15	62	1	12	copy fasta	EID1	chr15	48873134	48885173
EID1_chr15_48873134_48885173	0/0	t0003	1477	10	0	0	10	0	0	copy fasta	EID1	chr15	48873134	48885173
EID1_chr15_48873134_48885173	0/0	t0004	1477	8	8	0	0	0	0	copy fasta	EID1	chr15	48873134	48885173
EID1_chr15_48873134_48885173	0/0	t0005	1477	1	1	0	0	0	0	copy fasta	EID1	chr15	48873134	48885173
EID2B_chr19_39525987_39537852	1/1	t0001	1381	162	31	25	88	3	13	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0002	1381	108	11	22	58	7	10	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0003	1382	50	2	14	18	4	12	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0004	1380	45	4	4	32	1	4	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0005	1382	28	24	3	1	0	0	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0006	1380	13	13	0	0	0	0	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0007	1382	2	0	0	1	0	1	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0008	1381	2	0	1	0	1	0	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0009	1380	2	1	1	0	0	0	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0010	1383	1	0	0	1	0	0	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0011	1381	1	0	1	0	0	0	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0012	1381	1	1	0	0	0	0	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0013	1380	1	0	1	0	0	0	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0014	1381	1	0	0	1	0	0	copy fasta	EID2B	chr19	39525987	39537852
EID2B_chr19_39525987_39537852	0/0	t0015	1381	1	1	0	0	0	0	copy fasta	EID2B	chr19	39525987	39537852
EID2_chr19_39533707_39545161	0/0	t0001	745	277	55	48	135	12	27	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	1/1	t0002	745	78	11	18	36	3	8	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	t0003	745	50	4	4	36	1	5	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	t0004	745	6	6	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	t0005	745	3	3	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	t0006	745	3	3	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	t0007	745	1	1	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	t0008	745	1	0	0	1	0	0	copy fasta	EID2	chr19	39533707	39545161
EID2_chr19_39533707_39545161	0/0	t0009	745	1	1	0	0	0	0	copy fasta	EID2	chr19	39533707	39545161
EID3_chr12_104298739_104310205	1/1	t0001	466	384	85	63	171	18	45	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	t0002	466	12	0	0	12	0	0	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	t0003	466	7	7	0	0	0	0	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	t0004	466	6	1	3	0	0	2	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	t0005	466	3	3	0	0	0	0	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	t0006	466	2	2	0	0	0	0	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	t0007	466	2	0	0	0	0	2	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	t0008	466	1	0	0	1	0	0	copy fasta	EID3	chr12	104298739	104310205
EID3_chr12_104298739_104310205	0/0	t0009	466	1	0	0	0	0	1	copy fasta	EID3	chr12	104298739	104310205
EIF1AD_chr11_65991545_66007157	0/0	t0001	2419	145	24	24	76	2	19	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/1	t0002	2420	64	6	14	26	6	11	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0003	2419	48	21	7	8	2	10	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	1/0	t0004	2419	32	15	1	15	0	0	copy fasta	EIF1AD	chr11	65991545	66007157