JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF1AD_chr11_65991545_66007157	0/0	t0005	2410	25	0	0	25	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0006	2418	14	2	4	5	0	3	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0007	2420	6	1	0	5	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0008	2421	5	4	1	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0009	2421	4	0	1	3	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0010	2418	4	3	1	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0011	2419	4	0	0	4	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0012	2418	3	2	0	1	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0013	2410	3	3	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0014	2419	3	3	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0015	2419	3	0	0	3	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0016	2419	2	0	2	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0017	2419	2	0	0	2	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0018	2420	2	2	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0019	2419	2	0	0	2	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0020	2419	2	0	1	0	1	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0021	2410	1	0	0	1	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0022	2419	1	0	0	0	0	1	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0023	2419	1	0	0	1	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0024	2420	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0025	2419	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0026	2420	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0027	2420	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0028	2419	1	0	1	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0029	2419	1	0	0	1	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0030	2419	1	0	0	0	1	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0031	2419	1	0	0	1	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0032	2418	1	0	0	1	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0033	2419	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0034	2421	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0035	2410	1	0	1	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0036	2419	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0037	2420	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0038	2421	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0039	2418	1	0	0	1	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0040	2410	1	1	0	0	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AD_chr11_65991545_66007157	0/0	t0041	2419	1	0	0	1	0	0	copy fasta	EIF1AD	chr11	65991545	66007157
EIF1AX_chrX_20119525_20146838	1/1	t0001	3980	134	10	36	61	6	19	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0002	3979	50	25	13	6	3	3	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0003	3980	24	0	0	24	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0004	3978	13	10	3	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0005	3979	12	12	0	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0006	3981	9	0	0	8	0	1	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0007	3981	4	1	0	2	0	1	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0008	3980	4	0	0	4	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0009	3979	4	4	0	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0010	3980	3	2	0	1	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0011	3982	3	1	2	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0012	3980	2	0	2	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0013	3979	2	1	1	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838