JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF1AX_chrX_20119525_20146838	0/0	t0014	3982	1	0	0	1	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0015	3978	1	1	0	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0016	3980	1	0	0	1	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0017	3978	1	0	0	0	0	1	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0018	3980	1	0	0	1	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0019	3978	1	0	0	1	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0020	3979	1	1	0	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0021	3979	1	1	0	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0022	3980	1	1	0	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0023	3979	1	0	1	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0024	3979	1	0	0	1	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0025	3976	1	1	0	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0026	3978	1	1	0	0	0	0	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AX_chrX_20119525_20146838	0/0	t0027	3977	1	0	0	0	0	1	copy fasta	EIF1AX	chrX	20119525	20146838
EIF1AY_chrY_20570776_20598154	1/1	t0001	905	132	18	20	71	5	16	copy fasta	EIF1AY	chrY	20570776	20598154
EIF1AY_chrY_20570776_20598154	0/0	t0002	907	1	0	0	1	0	0	copy fasta	EIF1AY	chrY	20570776	20598154
EIF1B_chr3_40304707_40317424	0/1	t0001	648	190	47	24	93	3	22	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0002	647	166	34	30	76	10	16	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0003	648	25	1	2	16	0	6	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	1/0	t0004	646	10	8	1	0	0	0	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0005	647	7	7	0	0	0	0	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0006	647	2	0	1	0	0	1	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0007	647	2	0	0	2	0	0	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0008	648	1	0	0	1	0	0	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0009	647	1	1	0	0	0	0	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0010	648	1	0	0	0	1	0	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0011	646	1	1	0	0	0	0	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0012	647	1	1	0	0	0	0	copy fasta	EIF1B	chr3	40304707	40317424
EIF1B_chr3_40304707_40317424	0/0	t0013	647	1	0	0	0	0	1	copy fasta	EIF1B	chr3	40304707	40317424
EIF1_chr17_41683885_41697668	0/0	t0001	1994	145	35	29	46	8	27	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	1/1	t0002	1997	128	34	29	52	6	5	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0003	1985	13	13	0	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0004	1995	4	4	0	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0005	1994	3	0	0	0	0	3	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0006	1994	3	0	0	3	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0007	1994	3	3	0	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0008	1997	2	0	0	2	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0009	1997	2	0	0	0	0	2	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0010	1994	2	0	1	0	0	1	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0011	1997	2	0	2	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0012	1997	2	2	0	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0013	1997	2	1	1	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0014	1997	2	0	2	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0015	1997	2	0	2	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0016	1994	2	0	0	0	0	2	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0017	1994	2	0	0	2	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0018	1997	2	2	0	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0019	1997	1	0	1	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0020	1997	1	0	0	0	0	1	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0021	1994	1	0	0	1	0	0	copy fasta	EIF1	chr17	41683885	41697668