JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF1_chr17_41683885_41697668	0/0	t0022	1994	1	1	0	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0023	1994	1	0	0	1	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0024	1997	1	0	0	0	0	1	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0025	1985	1	0	1	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0026	1997	1	0	0	1	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF1_chr17_41683885_41697668	0/0	t0027	1985	1	1	0	0	0	0	copy fasta	EIF1	chr17	41683885	41697668
EIF2AK1_chr7_6017247_6064175	0/1	t0001	2522	145	39	21	65	3	16	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0002	2522	80	2	12	59	1	6	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0003	2522	45	13	13	10	5	4	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	1/0	t0004	2519	41	8	15	13	1	3	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0005	2522	41	3	6	15	3	14	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0006	2522	13	13	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0007	2519	9	8	1	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0008	2522	7	0	0	7	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0009	2522	7	5	0	2	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0010	2522	4	1	3	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0011	2519	2	0	0	2	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0012	2522	2	0	0	2	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0013	2522	2	1	1	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0014	2522	2	0	0	0	2	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0015	2522	2	0	2	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0016	2519	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0017	2522	1	1	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0018	2522	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0019	2522	1	0	1	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0020	2522	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0021	2522	1	1	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0022	2522	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0023	2522	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0024	2522	1	0	0	0	0	1	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0025	2522	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0026	2522	1	0	0	0	1	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0027	2522	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0028	2522	1	0	1	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0029	2522	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0030	2522	1	1	0	0	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK1_chr7_6017247_6064175	0/0	t0031	2522	1	0	0	1	0	0	copy fasta	EIF2AK1	chr7	6017247	6064175
EIF2AK2_chr2_37094210_37161980	0/0	t0001	8325	83	15	7	47	4	10	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/1	t0002	8321	56	1	11	31	5	7	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0003	8320	30	2	15	7	1	5	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0004	8327	17	4	2	1	3	7	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0005	8325	11	0	6	5	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	1/0	t0006	8320	7	5	1	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0007	8321	6	6	0	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0008	8322	6	6	0	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0009	8316	4	4	0	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0010	8321	4	1	2	0	0	1	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0011	8321	4	3	1	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0012	8312	4	1	2	0	1	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0013	8312	4	3	1	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980