Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGO3_chr1_35926105_36077500	0/0	t0010	17076	6	2	0	4	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0011	17078	5	5	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0012	17079	5	3	2	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0013	17078	4	0	3	0	0	1	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0014	17081	4	3	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0015	17078	4	4	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0016	17078	3	3	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0017	17078	3	2	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0018	17081	3	3	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0019	17078	3	3	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0020	17080	2	2	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0021	17081	2	0	0	2	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0022	17079	2	2	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0023	17078	2	0	0	2	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0024	17078	2	2	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0025	17078	2	0	0	0	0	2	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0026	17078	2	2	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0027	17075	2	1	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0028	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0029	17082	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0030	17083	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0031	17080	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0032	17080	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0033	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0034	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0035	17078	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0036	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0037	17077	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0038	17080	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0039	17077	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0040	17147	1	0	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0041	17078	1	0	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0042	17079	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0043	17081	1	0	0	0	1	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0044	17079	1	0	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0045	17079	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0046	17079	1	0	0	0	0	1	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0047	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0048	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0049	17078	1	0	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0050	17077	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0051	17077	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0052	17077	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0053	17077	1	0	1	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0054	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0055	17078	1	0	0	0	0	1	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0056	17078	1	1	0	0	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0057	17078	1	0	0	0	1	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0058	17079	1	0	0	1	0	0	copy fasta	AGO3	chr1	35926105	36077500
AGO3_chr1_35926105_36077500	0/0	t0059	17078	1	0	0	0	0	1	copy fasta	AGO3	chr1	35926105	36077500