JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF2AK2_chr2_37094210_37161980	0/0	t0064	8319	1	1	0	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0065	8319	1	1	0	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0066	8330	1	0	0	0	0	1	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0067	8328	1	0	0	0	1	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0068	8324	1	0	1	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0069	8328	1	0	0	1	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0070	8323	1	0	1	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0071	8322	1	1	0	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0072	8313	1	1	0	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0073	8312	1	1	0	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0074	8316	1	0	0	1	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0075	8314	1	0	1	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0076	8316	1	1	0	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0077	8311	1	0	1	0	0	0	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK2_chr2_37094210_37161980	0/0	t0078	8312	1	0	0	0	0	1	copy fasta	EIF2AK2	chr2	37094210	37161980
EIF2AK3_chr2_88551741_88632464	1/1	t0001	1186	351	75	61	152	16	45	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	t0002	1186	4	4	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	t0003	1186	4	0	3	0	0	1	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	t0004	1186	2	0	0	2	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	t0005	1186	1	0	0	1	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	t0006	1186	1	1	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	t0007	1186	1	1	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	t0008	1186	1	0	0	1	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK3_chr2_88551741_88632464	0/0	t0009	1186	1	1	0	0	0	0	copy fasta	EIF2AK3	chr2	88551741	88632464
EIF2AK4_chr15_39929115_40040591	0/1	t0001	589	123	20	29	49	8	16	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0002	589	115	23	12	73	0	7	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	1/0	t0003	589	71	10	5	51	1	3	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0004	589	23	8	5	3	1	6	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0005	588	20	18	2	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0006	589	6	5	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0007	589	3	2	1	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0008	589	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0009	589	1	1	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0010	589	1	1	0	0	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0011	588	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0012	588	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0013	589	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2AK4_chr15_39929115_40040591	0/0	t0014	589	1	0	0	1	0	0	copy fasta	EIF2AK4	chr15	39929115	40040591
EIF2A_chr3_150541787_150591016	0/1	t0001	2118	131	6	22	81	5	16	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0002	2118	116	25	17	62	3	9	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	1/0	t0003	2122	61	21	14	21	1	3	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0004	2118	28	10	9	2	1	6	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0005	2122	11	0	7	0	1	3	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0006	2116	10	9	1	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0007	2118	8	7	1	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0008	2122	6	5	1	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0009	2122	4	0	1	0	0	3	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0010	2122	3	3	0	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0011	2118	3	0	1	1	1	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0012	2118	2	0	0	2	0	0	copy fasta	EIF2A	chr3	150541787	150591016