JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF2A_chr3_150541787_150591016	0/0	t0013	2122	2	2	0	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0014	2122	1	0	0	1	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0015	2122	1	0	0	1	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0016	2122	1	1	0	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0017	2118	1	1	0	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0018	2118	1	1	0	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0019	2118	1	0	1	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0020	2118	1	1	0	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0021	2118	1	0	1	0	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2A_chr3_150541787_150591016	0/0	t0022	2118	1	0	0	1	0	0	copy fasta	EIF2A	chr3	150541787	150591016
EIF2B1_chr12_123615406_123638686	0/0	t0001	1480	38	3	12	17	1	5	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0002	1482	33	5	9	15	1	3	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0003	1448	29	7	9	2	2	9	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/1	t0004	1478	23	4	7	9	2	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0005	1476	17	3	0	12	2	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0006	1488	16	2	2	8	2	2	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0007	1486	15	0	2	10	2	1	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0008	1484	10	0	1	4	0	5	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0009	1472	8	0	2	5	0	1	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0010	1476	7	3	1	2	1	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0011	1470	6	6	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0012	1474	5	1	0	4	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0013	1478	5	2	0	0	0	3	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0014	1480	4	3	1	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0015	1490	4	1	0	2	0	1	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0016	1482	4	2	1	0	0	1	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0017	1480	4	4	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0018	1472	4	2	2	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0019	1452	3	0	0	3	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0020	1464	3	0	1	2	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0021	1476	3	0	0	0	3	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0022	1474	3	1	1	0	0	1	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0023	1486	3	0	1	2	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0024	1482	3	3	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0025	1470	3	0	3	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0026	1470	2	2	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0027	1480	2	2	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0028	1448	2	2	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0029	1478	2	0	0	2	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0030	1482	2	2	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0031	1480	2	0	1	0	1	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0032	1478	2	2	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0033	1480	2	1	1	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0034	1474	2	2	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0035	1476	2	2	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0036	1472	2	1	1	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0037	1480	2	0	0	2	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0038	1486	2	0	0	2	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0039	1462	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0040	1476	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686