JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF2B1_chr12_123615406_123638686	0/0	t0041	1478	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0042	1482	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0043	1474	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0044	1480	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0045	1468	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0046	1446	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0047	1480	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0048	1458	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0049	1468	1	0	0	1	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0050	1470	1	0	0	1	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0051	1477	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0052	1479	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0053	1481	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0054	1483	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0055	1494	1	0	1	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0056	1496	1	0	1	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0057	1464	1	0	0	1	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0058	1476	1	0	0	0	1	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0059	1472	1	0	0	1	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0060	1484	1	0	1	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0061	1472	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0062	1476	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0063	1480	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0064	1484	1	0	0	1	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0065	1494	1	0	0	0	0	1	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	1/0	t0066	1480	1	0	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0067	1474	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0068	1480	1	0	1	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0069	1480	1	0	0	0	0	1	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0070	1490	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0071	1472	1	0	0	0	0	1	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0072	1482	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0073	1482	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0074	1476	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0075	1480	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0076	1482	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0077	1486	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0078	1466	1	0	0	1	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0079	1484	1	0	0	1	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0080	1490	1	0	0	0	0	1	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B1_chr12_123615406_123638686	0/0	t0081	1460	1	1	0	0	0	0	copy fasta	EIF2B1	chr12	123615406	123638686
EIF2B2_chr14_74997921_75017366	0/0	t0001	3249	98	28	19	31	5	15	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/1	t0002	3247	81	1	15	48	7	9	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0003	3260	74	16	20	31	0	7	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0004	3260	16	16	0	0	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0005	3247	11	0	1	10	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0006	3250	8	7	0	0	0	1	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	1/0	t0007	3249	4	1	2	0	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0008	3260	4	3	1	0	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0009	3246	3	1	0	2	0	0	copy fasta	EIF2B2	chr14	74997921	75017366