JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EIF2B2_chr14_74997921_75017366	0/0	t0010	3249	3	2	1	0	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0011	3246	2	1	0	0	0	1	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0012	3249	2	0	0	1	0	1	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0013	3260	2	0	0	2	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0014	3247	2	0	0	0	0	2	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0015	3246	1	0	0	1	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0016	3260	1	1	0	0	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0017	3260	1	0	0	0	0	1	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0018	3260	1	0	0	1	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0019	3249	1	0	0	1	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0020	3247	1	0	0	1	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0021	3235	1	0	0	1	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0022	3247	1	0	0	1	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0023	3247	1	0	0	1	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0024	3247	1	0	0	1	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0025	3247	1	0	0	1	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0026	3249	1	1	0	0	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0027	3249	1	1	0	0	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0028	3249	1	0	0	0	0	1	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0029	3248	1	1	0	0	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B2_chr14_74997921_75017366	0/0	t0030	3260	1	0	1	0	0	0	copy fasta	EIF2B2	chr14	74997921	75017366
EIF2B3_chr1_44845522_44991595	0/1	t0001	542	194	54	35	80	10	14	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	1/0	t0002	542	125	23	19	53	6	23	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	t0003	542	1	0	0	1	0	0	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	t0004	542	1	0	0	0	0	1	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B3_chr1_44845522_44991595	0/0	t0005	542	1	1	0	0	0	0	copy fasta	EIF2B3	chr1	44845522	44991595
EIF2B4_chr2_27359352_27375338	1/1	t0001	73	377	78	74	163	14	46	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B4_chr2_27359352_27375338	0/0	t0002	73	1	0	0	1	0	0	copy fasta	EIF2B4	chr2	27359352	27375338
EIF2B5_chr3_184130358_184150311	1/0	t0001	397	212	51	44	94	7	15	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/1	t0002	395	201	36	35	95	5	29	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	t0003	397	8	7	1	0	0	0	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	t0004	395	4	0	0	4	0	0	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2B5_chr3_184130358_184150311	0/0	t0005	397	1	0	0	1	0	0	copy fasta	EIF2B5	chr3	184130358	184150311
EIF2D_chr1_206586642_206617465	1/1	t0001	257	423	96	66	209	12	38	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	t0002	257	2	0	2	0	0	0	copy fasta	EIF2D	chr1	206586642	206617465
EIF2D_chr1_206586642_206617465	0/0	t0003	257	1	0	0	1	0	0	copy fasta	EIF2D	chr1	206586642	206617465
EIF2S1_chr14_67355328_67391516	0/0	t0001	3205	122	37	19	59	1	6	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	1/1	t0002	3206	121	10	37	52	3	17	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0003	3205	16	11	2	2	0	1	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0004	3207	14	2	1	11	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0005	3205	14	1	0	12	0	1	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0006	3207	8	0	2	6	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0007	3205	7	0	6	1	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0008	3204	5	3	2	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0009	3208	5	0	0	4	0	1	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0010	3203	5	5	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0011	3205	5	5	0	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0012	3206	4	1	0	3	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0013	3206	3	0	3	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516
EIF2S1_chr14_67355328_67391516	0/0	t0014	3208	3	2	1	0	0	0	copy fasta	EIF2S1	chr14	67355328	67391516